Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme139305g00001 ATGAAGCAATTACTTTCCGGTCTTGAGCATTGCCACAGTCGAGGCGTATTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATCCTAAAAATTGCAGATTTTGGACTGGCAACTTTCTATAATCCTAATAAAAAACAGTGCATGACAAGCAGAGTTGTGACACTTTGGTATCGACCCCCTGAGCTTCTTCTTGGGGCTACATTTTATGGTGTAGGTATTGATCTTTGGAGTGCTGGTTGTATTTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGAACAGAG 306 0.4412 MKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYNPNKKQCMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILAELLAGKPIMPGRTE 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme139305g00001 102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Trme139305g00001 102 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme139305g00001 102 PANTHER CELL DIVISION PROTEIN KINASE 1 102 - -
Trme139305g00001 102 Pfam Protein kinase domain 1 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme139305g00001 102 Gene3D Transferase(Phosphotransferase) domain 1 1 102 - -
Trme139305g00001 102 SUPERFAMILY Protein kinase-like (PK-like) 1 101 IPR011009 -
Trme139305g00001 102 FunFam Mitogen-activated protein kinase 1 102 - -
Trme139305g00001 102 SMART serkin_6 1 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme139305g00001 Trme-Chr139305 38 343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme139305g00001 1 102 Core Cell Cycle Gene Families AT5G64960 71.569 1.03e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme139305g00001 Pkinase 1.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme139305g00001 K08819 - cave:132175018 201.445