Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme139235g00001 ATGGGCCATGTTGATCACGGCAAAACTTCTCTTCTTGATGCCTTGCGTCAAACATCAGTGGCAGCCAGGGAGGCTGGTGGCATTACTCAGCATCTTGGTGCCTTTGTGGTGGGCATGTCATCAGGAGCATCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCAATGCGCGCAAGAGCTAATGTACCAATTGTAGTTGCAATCAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTAAAACTACAGCTTGCTTCCGAGGGCTTGCTGCTGGAGGAGATGGGTGGGGATATTCAGGTCGTTGAAGTTTCAGCGATTAAAAAGACTGGACTGGATAACCTAGAGGTAGCTTTACTCCTTCAGGCTGATATGATGGATCTTAAAGCACGATTTGATGGGCCTGCTCAAGCAT 424 0.4623 MGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVGMSSGASITFLDTPGHAAFSAMRARANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDIQVVEVSAIKKTGLDNLEVALLLQADMMDLKARFDGPAQA 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme139235g00001 141 CDD IF2_eIF5B 1 129 - -
Trme139235g00001 141 Gene3D - 63 135 IPR027417 -
Trme139235g00001 141 Gene3D - 1 62 IPR027417 -
Trme139235g00001 141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 131 IPR027417 -
Trme139235g00001 141 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 63 141 IPR015760 -
Trme139235g00001 141 Pfam Elongation factor Tu GTP binding domain 1 62 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme139235g00001 Trme-Chr139235 1 515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme139235g00001 1 75 Eukaryotic Initiation Factors Gene Family AT1G21160 40.000 2.81e-12 61.2