Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme139167g00001 ATGATGTTTGAAAATATCATTGAAGCAACTGAGAATTTTGATGACAAATATCTCATTGGAGTAGGAAGTCAAGGAAATGTTTACAAGGCAGAATTGTCTCCAGGTATGGTGGTTGCGGTGAAGAAACTTCATTTAGTAACAGATGAAGAAATGTCAACTTTCAGTTCAAAGTCTTTTATGAGTGAGATTGAAACTTTAACAGGAATCAAACACAGGAACATCATAAAGCTTTATGGATTTTGCTCACATTCTAAGTTTTCATTTTTAGTTTACAAGTTCTTAGAAGGCGGAAGCTTAGATCATATACTAAACAATGACACATACGCCTCCGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGGTTTGTCCTATTTGCATCATGATTGTTCACCTCCTGTTATTCATCGTGATATATCGAGCAAAAATGTTCTTCTTAATCTTGACTATGAAGCTCATGTCTCCGACTTTGGGACCGCTA 496 0.3629 MMFENIIEATENFDDKYLIGVGSQGNVYKAELSPGMVVAVKKLHLVTDEEMSTFSSKSFMSEIETLTGIKHRNIIKLYGFCSHSKFSFLVYKFLEGGSLDHILNNDTYASAFDWEKRVNVVKGVANGLSYLHHDCSPPVIHRDISSKNVLLNLDYEAHVSDFGTA 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme139167g00001 165 Pfam Protein tyrosine and serine/threonine kinase 19 163 IPR001245 GO:0004672|GO:0006468
Trme139167g00001 165 PANTHER LEUCINE RICH REPEAT KINASE 2 1 165 - -
Trme139167g00001 165 SUPERFAMILY Protein kinase-like (PK-like) 4 165 IPR011009 -
Trme139167g00001 165 Gene3D Transferase(Phosphotransferase) domain 1 94 165 - -
Trme139167g00001 165 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Trme139167g00001 165 FunFam Os07g0541700 protein 94 165 - -
Trme139167g00001 165 ProSiteProfiles Protein kinase domain profile. 13 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme139167g00001 165 ProSitePatterns Tyrosine protein kinases specific active-site signature. 139 151 IPR008266 GO:0004672|GO:0006468
Trme139167g00001 165 FunFam Leucine-rich repeat receptor protein kinase MSP1 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme139167g00001 Trme-Chr139167 1 496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme139167g00001 3 165 Receptor kinase-like Gene Family AT4G08850 57.927 5.63e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme139167g00001 PK_Tyr_Ser-Thr 2.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme139167g00001 - - gmx:100814634 261.536