Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme139001g00001 ATGGCAGCTGTTGCAATATCTCAGTCCGGCTTCATGGCACCAGGAGCCAGTAAAGCAAAAAGTTCTGCTGCTTCTATACTTGCTATCCTTGATCAGAAATCAAAAATTGACACCAGCGATGAATCAGGAATGACACTGGAAGATGTGAAGGGAGAGATAGAGTTTCACAATGTCGCTTTCAAGTATCCAACTAGACCTGATGTTCATATATTC 213 0.4225 MAAVAISQSGFMAPGASKAKSSAASILAILDQKSKIDTSDESGMTLEDVKGEIEFHNVAFKYPTRPDVHIF 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme139001g00001 71 Gene3D ABC transporter type 1, transmembrane domain 1 42 IPR036640 GO:0005524|GO:0016020
Trme139001g00001 71 PANTHER ABC TRANSPORTER B FAMILY 16 71 IPR039421 -
Trme139001g00001 71 FunFam Uncharacterized protein 14 43 - -
Trme139001g00001 71 Gene3D - 43 71 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme139001g00001 Trme-Chr139001 362 574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme139001g00001 26 71 Calmodulin-binding Proteins AT2G36910 47.826 7.82e-10 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme139001g00001 K05658 - lja:Lj4g3v2226770.1 113.62