Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13890g00001 ATGTTTGCTTCGTCTAGACACACAATTATTCACACATATCTACAACTTTTACAGGTACCAAACCCTAATTGGCCGGAGAAAAAGGCGATCGATGAGACGTCGTGGACGGATGTTGAGTACTGTAAATTGAGGGGGAAGTGGTATCCGGTGTCGAAGACCGAGGCTGAGAAGGCGGCGTGGGAATTTCGAGAGAAAAATGATGGTATTGATGTGGTGGCAATTCATCCGGGGACTTGTTTGGGGGAGTTGATACAGAAGGAGATGAATGCAAGTTCAGCGGTGTTGCAGAGGTTGATGATGGGGAGCAAGGATACTCAAGAGTGTTATTGGTTGGGGGCTGTTCATGTTAAAGATGTTGCTAGAGCTCATGTGTTGGTTTATGAAACTCCAACTGCTGCTGGTAGATATCTTTGTGTTAATGGGATATATCAGTTTTCTAGTTTTGCTAAAACTGTCTCTGAATTGTATCCTGATTTTCCTATTCACAG 488 0.4385 MFASSRHTIIHTYLQLLQVPNPNWPEKKAIDETSWTDVEYCKLRGKWYPVSKTEAEKAAWEFREKNDGIDVVAIHPGTCLGELIQKEMNASSAVLQRLMMGSKDTQECYWLGAVHVKDVARAHVLVYETPTAAGRYLCVNGIYQFSSFAKTVSELYPDFPIH 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13890g00001 162 Pfam NAD dependent epimerase/dehydratase family 47 132 IPR001509 -
Trme13890g00001 162 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 157 IPR036291 -
Trme13890g00001 162 Gene3D - 2 162 - -
Trme13890g00001 162 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 18 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13890g00001 Trme-Chr13890 49 536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13890g00001 6 162 Monolignol Biosynthesis Gene Families AT2G02400 60.510 4.29e-70 213