Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme138894g00001 | TCCTTGGCAGCAATATATCCAGTGCCAGCGTACACCGCCCCAGTGAATACAGTTCCACCAGAATACGACGTCAACAATACTACCATTTTTGTTGGTAATTTGGATCTTAATGTCTCAGAGGAGGAGCTGAAGCAAAACTTTCTGCAATTTGGAGAGATTGTTTCTGTCAAAGTACATGCTGGCAAAGCATGTGGTTTTGTTCAATTTGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAA | 253 | 0.4387 | SLAAIYPVPAYTAPVNTVPPEYDVNNTTIFVGNLDLNVSEEELKQNFLQFGEIVSVKVHAGKACGFVQFGARASAEEAIQKMQG | 84 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme138894g00001 | 84 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 84 | IPR035979 | GO:0003676 | |
| Trme138894g00001 | 84 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 27 | 84 | IPR000504 | GO:0003723 | |
| Trme138894g00001 | 84 | PANTHER | PRE-MRNA-SPLICING FACTOR RBM22 | 19 | 83 | IPR039171 | GO:0003723 | |
| Trme138894g00001 | 84 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 29 | 84 | IPR000504 | GO:0003723 | |
| Trme138894g00001 | 84 | Gene3D | - | 20 | 84 | IPR012677 | - | |
| Trme138894g00001 | 84 | SMART | rrm1_1 | 28 | 84 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme138894g00001 | Trme-Chr138894 | 1 | 573 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme138894g00001 | 8 | 84 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 34.483 | 3.14e-08 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme138894g00001 | - | - | tpra:123894020 | 164.081 |