Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13878g00001 ATGTCATCGTTTCAAATTAATGTATATTCTGCACAAGAAAGGATTGATTACTTATTGAGTCTTGGGGTTAAACATACAGATATAAGAAGAATCCTTTTGAGGCAACCACAAATTCTTGAATATACGGTGGAGAACAATTTGAAGACACACGTAGCTTTCTTGATGGGTTTAGGCGTACCTAGTTCCAAATTAGGGCAAATTATTGCTTCTACTCCGTCCATTTTTTCTTACAGTGTTGAGAACTCGTTAAAACCAACGGTGAGATATTTAATTGAAGAAGTTGGCATCAAGGAAAAAGATTTGGGTAAAGTCATTCAACTGAGTCCTCAAATTCTTGTCCAACGTATTGACATTTCATGGAATACTCGATTTATGTTCCTTACCAAAGAATTGGGTGCACCAAAAGAGAGCATTGTGAAGATGGTGACAAAACATCCTCAGCTTCTCCATTACAGCATTGATGATGGATTGCTGCCAAGAATAAATTTCTTACGGAGCATAGGAATGAAAAATGCAGACATCTTGAAAATCTTGACTAGCCTTACACAGGTGCTATCTCTGTCCTTGGAGGCCAATCTAAAGCCGAAGTATTTGTACTTGGTAAATGAACTTCACAATGAGGTGAAATCCTTGACGAAATACCCGATGTACCTTAGCTTATCTTTGGAGCAGAGAATTCGTCCTCGTCATGCGTTCTTGGTTTCCTTGAAGAAAGCTCCAAAAGGACCATTTCCTCTTGGATCTCTAGTTCCAACTGATGAAGCCTTTTGTCAACA 776 0.3853 MSSFQINVYSAQERIDYLLSLGVKHTDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSSKLGQIIASTPSIFSYSVENSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRFMFLTKELGAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVKSLTKYPMYLSLSLEQRIRPRHAFLVSLKKAPKGPFPLGSLVPTDEAFCQ 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13878g00001 258 PANTHER CGI-12 PROTEIN-RELATED 13 257 IPR003690 GO:0003690|GO:0006355
Trme13878g00001 258 SMART mt_12 65 97 IPR003690 GO:0003690|GO:0006355
Trme13878g00001 258 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Trme13878g00001 258 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Trme13878g00001 258 SMART mt_12 175 207 IPR003690 GO:0003690|GO:0006355
Trme13878g00001 258 SMART mt_12 102 134 IPR003690 GO:0003690|GO:0006355
Trme13878g00001 258 SMART mt_12 29 60 IPR003690 GO:0003690|GO:0006355
Trme13878g00001 258 Gene3D Transcription termination factor 3, mitochondrial 10 258 IPR038538 -
Trme13878g00001 258 FunFam Transcription termination factor MTERF9, chloroplastic 40 258 - -
Trme13878g00001 258 Pfam mTERF 91 236 IPR003690 GO:0003690|GO:0006355
Trme13878g00001 258 Pfam mTERF 15 94 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trme13878g00001 mTERF 1.5e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13878g00001 K15031 - gmx:102660933 450.669