Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme138727g00001 ATGGATGTTTCGAAGAAATATGGGCTAGAGTATCGCTTGCTCCATGCCATTACGAAGGGACGTCCATGGTACGGTGAGTGGGGATATAATTTTGGCTCCGGTAGCTATTGTCTCACACAGGAAGCATATAAGTCTGCTGTAGAAAGCCTATCCAATCTACCCTTGTCCGTCTTCCTCTCCCAGGAACAAAAGCCCCACTCACGTGTGCAGGATATGATCTTGTATTACCAGGCTTTGTCAGAGCATGAGCTTGTAAATCTGAGGGACCTATTTTGTTTTTTGATGGGTTTGATGCATGATGCTCGCAAGAATGCCTCTAAGTCTGATGACATAACCTGCAAGAAGCGTCGGTTTGATGCTTCTGGATTATCAAGTTCTTGGGAGAAGAGTGACATTGAACGCGTGGAGGAAGCCATGCTCAGAGTGCTGCGTGCAGTGTCTGGATCTAATTGGGTGAGCCGTCGTGCTCTTAGGGGTGCTGTTTGCAAGGTGGCGTCTCCAGAGCTTCTTGATTATTGCCTTGCTGAACTGGGAGGAAAA 540 0.4759 MDVSKKYGLEYRLLHAITKGRPWYGEWGYNFGSGSYCLTQEAYKSAVESLSNLPLSVFLSQEQKPHSRVQDMILYYQALSEHELVNLRDLFCFLMGLMHDARKNASKSDDITCKKRRFDASGLSSSWEKSDIERVEEAMLRVLRAVSGSNWVSRRALRGAVCKVASPELLDYCLAELGGK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme138727g00001 180 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme138727g00001 Trme-Chr138727 1 540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme138727g00001 2 180 PHD Transcription Factor Family AT5G22260 32.275 2.23e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme138727g00001 K26271 - gmx:100818189 290.041