Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13870g00001 ATGGGGAAAAATGACTTTCTCACACCTAAGGCAATTGCCAATCGAATCAAAGCAAAAGGGCTGCAGAAACTTCGGTGGTATTGCCAGATGTGCCAGAAGCAGTGTCGTGATGAGAATGGTTTCAAATGCCATTGCATGAGTGAAGGGCACCAGCGTCAAATGCAAATTTTTGGACAAAACCCAACCCGCATAATTGAGGGTTATACTGAAGAGTTTGAGACAACATTTCTTGAGCATATGAAGCGCAGCCATCGATTCAGCCGTGTGGCTGCAACTGTAGTTTATAATGAATACATAAATGATAGAAACCATGTTCATATGAACTCCACGGAGTGGGCTACACTTACTGAGTTTGTTAAGTATTTGGGTCGAACTGGAAAGTGTAAGGTTGAAGAAACACCCAAAGGATGGTTCATTACATACATAGATAGAGATTCCGAAACTCTTTTCAAGGAGAAGATGAAGAATAAGAGAGCCAAGGCAGATTTGGTTGATGAAGAAAAGCAAGAGAAGGAGATCCAGAAACAGATTGAAAGGGCTGAGCAAATGATGCAGCAATCTATTCCCGAGTCCGAGCAGCCTTCACAGGCAGAGACTACAAGGGAACTAAATGTAGAAGATGGAACTAAGATAGGATTTTCTCTCGGGTCATCAGCTAAACCTGTGACCAAGGAAAAAGGTGAGGCGTCAAGGATAGTGTTTGATGAGGTTGATGAAGAGAAACATGAGGAGAGGAATCCCAAAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAACTTTGGAAGAAATGATCAAGGAGGAAGAGAGGAAAAAGGAAAAACTCAACAGGAAGGATTATTGGTTGCACGAGGGTATTGTTGTTAAGGTTATGAGCAAAGTCTTGGCAGAGAAAGGGTACTACAAGCAAAAGGGTGTTGTGAAAAAAGTGATTGACAAGTACGTCGGGGAAATAGAAATGCTAGACAGCAAGCATGTGCTTAGAGTTGATCAAGAAGAGCTTGAAACTGTGATACCACAGGTTGGGGGCCGTGTGAAAATTGTCAACGGGGCTTATCGTGGATCACTTGCTAGGCTACTGGGGGTGGATACAGATCGTTTTTGCGCTAAGGTGCAGATAGAGAAAGGTGCTTATGATGGCAGGGTGCTTAAAGCTGTGGAATATGAGGACATTTGTAAAGCAGCCTAA 1194 0.428 MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPTRIIEGYTEEFETTFLEHMKRSHRFSRVAATVVYNEYINDRNHVHMNSTEWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRAKADLVDEEKQEKEIQKQIERAEQMMQQSIPESEQPSQAETTRELNVEDGTKIGFSLGSSAKPVTKEKGEASRIVFDEVDEEKHEERNPKNNLKRKESGGGKSTLEEMIKEEERKKEKLNRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVKKVIDKYVGEIEMLDSKHVLRVDQEELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDRFCAKVQIEKGAYDGRVLKAVEYEDICKAA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13870g00001 397 Gene3D - 341 397 IPR014722 -
Trme13870g00001 397 SMART Kin17_mid_2 52 178 IPR019447 -
Trme13870g00001 397 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Trme13870g00001 397 Gene3D - 287 340 - -
Trme13870g00001 397 FunFam DNA/RNA-binding protein KIN17, putative 341 397 - -
Trme13870g00001 397 Pfam KN17 SH3-like C-terminal domain 279 332 IPR041330 -
Trme13870g00001 397 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Trme13870g00001 397 Coils Coil 260 280 - -
Trme13870g00001 397 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 396 IPR037321 -
Trme13870g00001 397 FunFam DNA/RNA-binding protein kin17-like 287 340 - -
Trme13870g00001 397 MobiDBLite consensus disorder prediction 224 265 - -
Trme13870g00001 397 Coils Coil 154 186 - -
Trme13870g00001 397 Gene3D - 60 160 IPR038254 -
Trme13870g00001 397 MobiDBLite consensus disorder prediction 210 265 - -
Trme13870g00001 397 MobiDBLite consensus disorder prediction 183 202 - -
Trme13870g00001 397 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Trme13870g00001 397 CDD KOW_KIN17 343 395 IPR041995 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13870g00001 Trme-Chr13870 54 1247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13870g00001 1 397 C2H2 Transcription Factor Family AT1G55460 70.913 0.0 592