Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme138568g00001 CAGAGTGGTGGGCTTTTGTTTTCGAGGGCTGAACCAAGACACAAGCAGGACATTGTGAGGCTTCTTAAAGAAGATGGGGAGGTTGTTGCTATGACTGGAGATGGTGTTAATGATGCACCCGCCTTAAAGCTTGCAGACATTGGTATTGCAATGGGCATTGCAGGGACAGAGGTGGCCAAGGAAGCTTCAGATATGGTGTTAGCAGACGATAATTTTAGTTCAATTGTTGCTGCTGTTGGGGAAGTAGGCTCTTACTCCATCCATTACCTGGATTGA 276 0.4674 QSGGLLFSRAEPRHKQDIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSSIVAAVGEVGSYSIHYLD 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme138568g00001 91 SUPERFAMILY HAD-like 6 80 IPR036412 -
Trme138568g00001 91 Gene3D - 5 77 IPR023214 -
Trme138568g00001 91 PRINTS P-type cation-transporting ATPase superfamily signature 56 68 - -
Trme138568g00001 91 PRINTS P-type cation-transporting ATPase superfamily signature 32 51 - -
Trme138568g00001 91 PANTHER CALCIUM-TRANSPORTING ATPASE 6 81 - -
Trme138568g00001 91 PRINTS H+-transporting ATPase (proton pump) signature 4 20 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme138568g00001 91 PRINTS H+-transporting ATPase (proton pump) signature 32 48 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme138568g00001 91 PRINTS H+-transporting ATPase (proton pump) signature 64 89 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme138568g00001 91 Pfam haloacid dehalogenase-like hydrolase 8 46 - -
Trme138568g00001 91 NCBIfam HAD-IC family P-type ATPase 6 79 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme138568g00001 Trme-Chr138568 1 568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme138568g00001 1 81 Primary Pumps ATPases(2) AT1G07810 92.593 2.25e-46 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme138568g00001 K01537 - csav:115719534 155.992