Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13855g00001 ATGTATAGATTAATATCCACGCCGGCATCAACATTCCGCCAATTCCGGCGACTCCGCTCCAGACCTAAAATCACCGCCGCAAGTGTTGAAGAGAAACACGCTTCACGTATCTTACTATGGCGGTACCAGATCCTGGACCCAGACAGCGAATTCGTTGCGTATTGGAACAAAGTCTTTCTCGTCACAAGTCTCCTCGCATTGTTCATAGACCCTCTTTACTTCTTCCTCCCAACCGTCGGTGGACCTGCTTGCTTGACGGCAGATCCCAAAATCAGCATCTTACTCACCGTTCTTCGATCGTTTGCGGATCTTTTTTATCTTCTTCATATGGTTATGAAGTTTCGTACTGCATTTGTTGCTCCTAATTCGAGAATTGTCGGTCGCGGTGAGCTTGTTATGGATTCTTGGGAAATTGCTTTGCGGTATTTGAAGTCTGATTTTGTTATTGATCTTTCTGCTACCATTCCATTGCCTCAGGCATGTTCCCTTGCACCTTTGTTCTTAGGATAG 510 0.4569 MYRLISTPASTFRQFRRLRSRPKITAASVEEKHASRILLWRYQILDPDSEFVAYWNKVFLVTSLLALFIDPLYFFLPTVGGPACLTADPKISILLTVLRSFADLFYLLHMVMKFRTAFVAPNSRIVGRGELVMDSWEIALRYLKSDFVIDLSATIPLPQACSLAPLFLG 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13855g00001 169 SUPERFAMILY Voltage-gated potassium channels 46 163 - -
Trme13855g00001 169 Pfam Ion transport protein 54 160 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trme13855g00001 169 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13855g00001 Trme-Chr13855 165 674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13855g00001 25 159 Ion Channels AT5G14870 62.500 8.72e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13855g00001 K05391 - gmx:100802812 269.24