Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme138458g00001 ATGCATTTTTCAGCTTCAATTCCAATTTTTCACAGAGATATAAAACCAAGTAACATACTCTTAGACAACAACTTTAGTGCCAAGGTGTCTGATTTTGGAACATCTAGATCAGTTCCAGTAGATAAGACTCATTTAACCACAGCTGTAGGAGAGCTTATAACCGGGAGAAAGCCGATAACATTCAATGATGAAGATGAAGGTCAGAATATGACTGCAAATTTCATTTCGGTGATGAAGGACAACCAACTTTCTACAATTTTAGATGACACAGTGATTAAGGAAGCAAGGAAAGAGGACATTATTGCCAT 308 0.3669 MHFSASIPIFHRDIKPSNILLDNNFSAKVSDFGTSRSVPVDKTHLTTAVGELITGRKPITFNDEDEGQNMTANFISVMKDNQLSTILDDTVIKEARKEDIIA 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme138458g00001 102 SUPERFAMILY Protein kinase-like (PK-like) 5 60 IPR011009 -
Trme138458g00001 102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 9 21 IPR008271 GO:0004672|GO:0006468
Trme138458g00001 102 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme138458g00001 102 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 49 IPR045274 GO:0007166
Trme138458g00001 102 Pfam Protein kinase domain 9 50 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme138458g00001 102 Gene3D Transferase(Phosphotransferase) domain 1 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme138458g00001 Trme-Chr138458 1 398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme138458g00001 1 102 Receptor kinase-like Gene Family AT1G16120 40.909 6.89e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trme138458g00001 Pkinase 1.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme138458g00001 - - gmx:100792803 150.214