Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme138402g00001 ATGTATTCGTGTAACCGTTGTAATAAGAAGAAATATTCSGTGCTTTCGGATTTGAAGAGTCATATGAGACAGTGTGGTGATGAGTGTAAGTGGAAATGTTGTTGTGGGACAACGTTTTCTAGGAAAGATAAGTTGTTTGGACATGTTGCTTTGTTTGAGGGTCATATGCCTGCTGTTGTTTTGGAAGAATGTGAGGAGAAAGGGAAACAGGTTATGGTGGAGGAGATTGAAGATTCTATTGTGGAGAAAGAGAAAAGTGATTTGG 265 0.3887 MYSCNRCNKKKYSVLSDLKSHMRQCGDECKWKCCCGTTFSRKDKLFGHVALFEGHMPAVVLEECEEKGKQVMVEEIEDSIVEKEKSDL 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme138402g00001 88 Gene3D Classic Zinc Finger 1 81 - -
Trme138402g00001 88 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 75 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme138402g00001 Trme-Chr138402 133 397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme138402g00001 2 63 C2H2 Transcription Factor Family AT1G34370 64.516 1.17e-25 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme138402g00001 None None None