Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme138332g00001 ATGTCAAAAGCAAAAAAGGAGCTAGAAGAAGTGATAGGCAAAGGTAAACCTATTGAAGAATCGGACATTGCTAGACTCCCGTATTTGCAAGCAATCATAAAAGAGACATTTCGATTGCACCCTCCAGTTCCTCTTTTGCTCCCTCGAAAAGCAGCNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTTGGGTCAAATATTGATGTAAAGGGTAGGAACTTTGAGCTTGCGCCATTCGGTGCTGGAAGAAGAATATGTCCCGGTATGATGTTAGCTTTAAGGATGTTGCTTTTGATGTTGGGTTCATTGGTCAACTCCTTTGATTGGAAGCTTGAAGATGACATGAAATTAGAAGATATGGACATGGAAGAAAAATTTGGAATTACCTTGCAAAAGGC 491 0.3014 MSKAKKELEEVIGKGKPIEESDIARLPYLQAIIKETFRLHPPVPLLLPRKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSNIDVKGRNFELAPFGAGRRICPGMMLALRMLLLMLGSLVNSFDWKLEDDMKLEDMDMEEKFGITLQKA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme138332g00001 164 Gene3D Cytochrome P450 1 57 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme138332g00001 164 Coils Coil 49 52 - -
Trme138332g00001 164 Gene3D Cytochrome P450 94 164 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme138332g00001 164 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 52 - -
Trme138332g00001 164 SUPERFAMILY Cytochrome P450 98 162 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme138332g00001 164 SUPERFAMILY Cytochrome P450 1 52 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme138332g00001 164 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 110 119 IPR017972 GO:0005506|GO:0016705
Trme138332g00001 164 PRINTS P450 superfamily signature 31 42 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme138332g00001 164 PRINTS P450 superfamily signature 108 117 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme138332g00001 164 PRINTS P450 superfamily signature 117 128 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme138332g00001 164 PRINTS E-class P450 group IV signature 26 42 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme138332g00001 164 PRINTS E-class P450 group IV signature 117 135 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme138332g00001 164 PRINTS E-class P450 group IV signature 101 117 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme138332g00001 164 Pfam Cytochrome P450 2 51 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme138332g00001 164 Pfam Cytochrome P450 101 158 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme138332g00001 Trme-Chr138332 1 491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme138332g00001 1 164 Cytochrome P450 AT2G45550 44.512 3.16e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme138332g00001 - - gmx:100798291 176.022