Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme138144g00001 | GACCGATCAGCTTTCTTCGACTGCGCCATACGAGGTTACCAAGACACATTATACGCACATGCTCACCGTCAATTCTACAGAAACTGTGAAATTTCAGGCACAGTTGATTTCATTTTCGGCTACTCAGCAACAGTAATACAAAACTCCAAAATAATAATTCGAAAACCGGATGCAAATCAACAAAACATAGTAGTAGCAGATGGAACAGATCAAAAGAACATGCCAACAGGAGTAGTACTTCAGAATTGTGAGATTATGCCAGAAGCAGAATTACAAGCTGATAGATTAACAGTTAAATCATATTTAGCGAGACCATGGAAAGCGTATTCAAGAGCAATATTTATGGAAAATACTATAGATGTTAAAGCAAGAGTTAAATGGGGAAAAGGTGTTCTTACAAAAGCTGATGCAATGAAATATACTGCTAATGAATGGATTCAAGGTGGTATGTGGTTACCTGCTACTGGTATACCCTTT | 477 | 0.3753 | DRSAFFDCAIRGYQDTLYAHAHRQFYRNCEISGTVDFIFGYSATVIQNSKIIIRKPDANQQNIVVADGTDQKNMPTGVVLQNCEIMPEAELQADRLTVKSYLARPWKAYSRAIFMENTIDVKARVKWGKGVLTKADAMKYTANEWIQGGMWLPATGIPF | 159 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme138144g00001 | 159 | SUPERFAMILY | Pectin lyase-like | 1 | 159 | IPR011050 | - | |
| Trme138144g00001 | 159 | Gene3D | - | 1 | 159 | IPR012334 | - | |
| Trme138144g00001 | 159 | ProSitePatterns | Pectinesterase signature 2. | 31 | 40 | IPR033131 | - | |
| Trme138144g00001 | 159 | PANTHER | PECTINESTERASE | 1 | 121 | - | - | |
| Trme138144g00001 | 159 | Pfam | Pectinesterase | 1 | 120 | IPR000070 | GO:0030599|GO:0042545 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme138144g00001 | Trme-Chr138144 | 1 | 576 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme138144g00001 | 1 | 158 | Carbohydrate Esterase | AT4G33230 | 41.969 | 1.11e-42 | 147 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme138144g00001 | K01051 | - | mtr:112416103 | 278.1 |