Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme138125g00001 ATTCAGATTGACAAAGATTTCAGTGCAAAGCTTTCAGGATATGGTTGTGTCGGACATGTTCCTAAGGAAGAGATTTCAAGCAGTTCATCTGCYGTTGGAAACCTATCGATGGAGACACTGGAGAAAGGAATGCTTACTCCAAAGAGCAACGTATGGAGTTTCGGAATTTTTCTTCTAGAGCTACTTACAGGAAGAAAGAATCTGGATAGCCGCCACCCCAAGGAAGAGAGGAATTTGGTGAAGTGGAGCAGGCCTTTCCTATCTGATGATCATCGTTTGTCAATGATCATGGATCCTCAACTCAAAGGTCGCTTTCCTTCTAAAGCGGCGAGTACAATAGCTCACATTGCACAAAGATGCCTTCAAATGGAGCCATCAGAACGACCAACCATGGGAACTGTTGTTGAGCATCTCAAAAAGATACAAGATTTGAAGCATTCTTCCAGATTCCCACTGCAAGAACCAGC 467 0.4368 IQIDKDFSAKLSGYGCVGHVPKEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLSDDHRLSMIMDPQLKGRFPSKAASTIAHIAQRCLQMEPSERPTMGTVVEHLKKIQDLKHSSRFPLQEPA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme138125g00001 156 SUPERFAMILY Protein kinase-like (PK-like) 3 143 IPR011009 -
Trme138125g00001 156 Pfam Protein tyrosine and serine/threonine kinase 28 138 IPR001245 GO:0004672|GO:0006468
Trme138125g00001 156 ProSiteProfiles Protein kinase domain profile. 1 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme138125g00001 156 PANTHER OS01G0588500 PROTEIN-RELATED 1 142 - -
Trme138125g00001 156 Gene3D Transferase(Phosphotransferase) domain 1 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme138125g00001 Trme-Chr138125 2 576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme138125g00001 1 138 Glycoside Hydrolase AT3G07070 41.549 2.69e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Trme138125g00001 PK_Tyr_Ser-Thr 1.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme138125g00001 - - tpra:123923511 315.849