Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme137682g00001 ATGCTTGCTTCAGACATGGGACTAAAACAAAACCAGCAACCAACTGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACTAGCACTCATGGTGGATTTTCAGTACCTCGTAGAGCTGCCGAGAAAATTTTCCCACCTCTGGACTTTTCAATGCAACCACCAGCTCAAGAAATAGTTGCCAAAGATTTGCATGACACTACATGGACGTTTAGACATATTTATCGCG 226 0.4204 MLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYR 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme137682g00001 75 Gene3D - 15 75 IPR015300 -
Trme137682g00001 75 Pfam B3 DNA binding domain 18 75 IPR003340 GO:0003677
Trme137682g00001 75 SUPERFAMILY DNA-binding pseudobarrel domain 8 75 IPR015300 -
Trme137682g00001 75 CDD B3_DNA 17 75 IPR003340 GO:0003677
Trme137682g00001 75 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 75 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme137682g00001 Trme-Chr137682 68 378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme137682g00001 1 75 B3 DNA Binding Superfamily AT1G19220 96.000 7.77e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme137682g00001 B3 2.8e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme137682g00001 - K14486 gmx:100804628 156.377