Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme137510g00001 ATGGATGTCTCAAGAATGAGGAATGTTGCTTCCTATATCAGTCATAGCTCAATTCCAAATGTGATGGTTCAATTTGTGCTATATGATCACAATAATTTGATGTACCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGTTCAGCCTTGACTATGGGGTAGCTGATGATGACGTGGCTTAA 195 0.4 MDVSRMRNVASYISHSSIPNVMVQFVLYDHNNLMYPHLMLFAMENIPPMREFSLDYGVADDDVA 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme137510g00001 64 Gene3D SET domain 1 63 IPR046341 -
Trme137510g00001 64 Pfam SET domain 8 57 IPR001214 GO:0005515
Trme137510g00001 64 SUPERFAMILY SET domain 2 58 IPR046341 -
Trme137510g00001 64 ProSiteProfiles SET domain profile. 1 57 IPR001214 GO:0005515
Trme137510g00001 64 PANTHER G9A, ISOFORM B 1 58 IPR043550 GO:0002039|GO:0016279|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme137510g00001 Trme-Chr137510 350 544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme137510g00001 1 63 EF-hand Containing Proteins AT5G13960 42.857 1.11e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trme137510g00001 SET 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme137510g00001 K11420 - cave:132179232 116.701