Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13746g00001 ATGCAGGGTGTTTTAAGGGATGGTACTCAAGTTGCTATCAAGTCTCTTTCTGTTGAGTCTAAACAAGGAACTCATGAATTTATGACAGAAATTGATATGATATCAAATATACAACATCCAAATCTTGTTAAACTCATCGGCTTCTGTATTGAGGGCAATCATCGAATATTGGTGTACGAGTTTCTTGAGAACAATAGCCTCGCAAGTTCTTTGCTAGGTTCAAAAAGTACATGTGTTCGTCTGGATTGGCCAAAGAGGGCTGCTATTTGCTGCGGTACAGCATCGGGTCTAAGCTTTCTTCATGAAGATGCTCAGCCAAACATTGTTCATAGAGATATCAAAGCCAGCAATATATTGTTAGATGAGAATTTCAATCCAAAAATTGGTGATTTTGGTCTTGCAAAACTCTTTCCTGACAATGTCACACATGTTAGCACCCGAGTTGCAGGAACAATGGGATATCTTGCGCCAGAATATGCGCTTCTAAGACAACTTACAAAGAAGGCAGATGTATACAGTTTTGGGATTCTGATGCTTGAAATAATCAGTGGTAAAAGTAGTAGCAAAGCTGCATTTGGAGACAATATTTTGGTTCTTGTCGAATGGGTATATTCCTCGATCCTTGTGTCGGAATAA 636 0.3899 MQGVLRDGTQVAIKSLSVESKQGTHEFMTEIDMISNIQHPNLVKLIGFCIEGNHRILVYEFLENNSLASSLLGSKSTCVRLDWPKRAAICCGTASGLSFLHEDAQPNIVHRDIKASNILLDENFNPKIGDFGLAKLFPDNVTHVSTRVAGTMGYLAPEYALLRQLTKKADVYSFGILMLEIISGKSSSKAAFGDNILVLVEWVYSSILVSE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13746g00001 211 Gene3D Transferase(Phosphotransferase) domain 1 63 210 - -
Trme13746g00001 211 ProSiteProfiles Protein kinase domain profile. 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme13746g00001 211 FunFam Lectin-domain containing receptor kinase A4.3 62 209 - -
Trme13746g00001 211 Gene3D Phosphorylase Kinase; domain 1 1 62 - -
Trme13746g00001 211 Pfam Protein tyrosine and serine/threonine kinase 8 189 IPR001245 GO:0004672|GO:0006468
Trme13746g00001 211 SMART serkin_6 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme13746g00001 211 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
Trme13746g00001 211 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 2 204 - -
Trme13746g00001 211 SUPERFAMILY Protein kinase-like (PK-like) 3 197 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13746g00001 Trme-Chr13746 192 1253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13746g00001 2 203 Receptor kinase-like Gene Family AT1G53420 58.416 1.68e-79 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme13746g00001 PK_Tyr_Ser-Thr 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13746g00001 - - gmx:100816683 355.14