Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme137427g00001 AAGAACGATTCACGGAAACTGTTTCAGCGTCTCTGGACTGACGAAGATGAGATCGTAATCTTGCAAGGGTTTCTCGATTACAACGCGAATCGTGGATCGTCTTATCATAATGATACTGGTTCGTTTTACGATCAAATTAAGTCCAAGATTCAACTCGATTTCAACAAGAGCCAGCTTGTTGATAAACTCCGAAGGTTGAAGAAAAAGTATCGCAACGTTCTTCAGAAATTTGATTCTGCTCATATGACAACACCGGTGAAGAATGAGCTGATTACTGAGAAGAAAACCGCATCACGAAAGCGGTCACGAACAACAACGGACGAGAAGCGTGAATTGAATGATTCTTTAGGCTTGAATAAGGATAATCATAATAATTCTGCTAATAACAATAGTAGCAATGTTGATGATGAAAATGGTGATAAAAGTAA 428 0.3855 KNDSRKLFQRLWTDEDEIVILQGFLDYNANRGSSYHNDTGSFYDQIKSKIQLDFNKSQLVDKLRRLKKKYRNVLQKFDSAHMTTPVKNELITEKKTASRKRSRTTTDEKRELNDSLGLNKDNHNNSANNNSSNVDDENGDKS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme137427g00001 142 Pfam Protein of unknown function, DUF573 8 80 IPR007592 GO:0006355
Trme137427g00001 142 PANTHER BNAANNG10740D PROTEIN-RELATED 6 87 IPR007592 GO:0006355
Trme137427g00001 142 MobiDBLite consensus disorder prediction 77 91 - -
Trme137427g00001 142 MobiDBLite consensus disorder prediction 118 135 - -
Trme137427g00001 142 MobiDBLite consensus disorder prediction 77 142 - -
Trme137427g00001 142 MobiDBLite consensus disorder prediction 92 117 - -
Trme137427g00001 142 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme137427g00001 Trme-Chr137427 1 578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme137427g00001 2 80 GeBP Transcription Factor Family AT3G04930 71.605 4.84e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trme137427g00001 DUF573 7e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme137427g00001 - - psat:127097903 162.54