Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13734g00001 TATCAAAGTCTAGGTTGTAATGATATATTCCCTTACTATGCTAAGCTTAAGCATGAGCAAAATTGCGGATTTCGTCCATATAATTGTCCCTATGCTGGATCTGAGTGCTCTGCAATTGGTGACATTTCATATCTTGTTGCCCATCTCAAGCATGACCACAAGGTTGACATGCATGATGGATTCACCTTCAATCATCGATATGTCAAAACAAATCCACATGAAGTTGAAAATGCTACATGGATGCTAACTGTTTTCAATTGTTATGGAAAGCATTTCTGCTTGCACTTTGAGGCTTTCCAGCTTGGCACGGCTCCAGTTTTTATGGCCTTCTTACGGTTTATGGGCGATGACAACGAATCAAAAAAATTCAGCTACAGCTTAGAAGTCGGTGCAAACGGGCGCAAACTTATATGGCAAGGAATTCCTCGGAGCATTCGTGACAGTCATAGTAAAGTTAGAGACAGTCAAGACGGACTTATAATTCAGAGGAATCAAGCCCTTTATTTTTCTGGCGGGGATAAACAGGAGTTGAAGTTGAGAATCACCGGTCGGATATGGAAAGAAGATTGA 570 0.4105 YQSLGCNDIFPYYAKLKHEQNCGFRPYNCPYAGSECSAIGDISYLVAHLKHDHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGANGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13734g00001 189 FunFam E3 ubiquitin-protein ligase SINAT3 1 49 - -
Trme13734g00001 189 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 188 - -
Trme13734g00001 189 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 50 182 IPR008974 GO:0005515
Trme13734g00001 189 FunFam E3 ubiquitin-protein ligase SINAT5-like 50 182 - -
Trme13734g00001 189 Pfam Seven in absentia protein family 1 182 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trme13734g00001 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 49 IPR013083 -
Trme13734g00001 189 SUPERFAMILY TRAF domain-like 1 186 - -
Trme13734g00001 189 ProSiteProfiles Zinc finger SIAH-type profile. 1 54 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13734g00001 Trme-Chr13734 167 1326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13734g00001 1 189 C3H Transcription Factor Family AT2G41980 83.069 5.06e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13734g00001 K04506 - qsa:O6P43_005820 367.851