Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme137330g00001 ATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGTCCTGAATCTCTAAGAGGAACACAACCAACAGGAATGTTAAGACTACCTTGTTACTGTTGTGCACAAGGATGCAGAAACAACATTGATCATCCAAGAGCAAAGCCATTGAAAGATTTTAGAACACTTCAAACACATTACAAAAGAAAACATGGAATTAAACCTTTCATGTGTAGAAAATGTAGCAAAGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGCAAGTTATGGTATTGTATTTGTGGTTCTGATTTCAAACATAAGAGATCTCTTAAAGATCATATTAAAGCTTTTGGAAATGGTCATGCTGCTTATGGATTTGATGGATTTGAAGAAGAA 390 0.3564 MHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAQGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGFDGFEEE 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme137330g00001 130 Gene3D Classic Zinc Finger 27 117 - -
Trme137330g00001 130 PANTHER ZINC FINGER PROTEIN WIP2 1 128 IPR043584 GO:0003700|GO:0010468
Trme137330g00001 130 FunFam Zinc finger protein WIP2 37 119 - -
Trme137330g00001 130 SUPERFAMILY beta-beta-alpha zinc fingers 54 88 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme137330g00001 Trme-Chr137330 1 390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme137330g00001 1 130 C2H2 Transcription Factor Family AT3G57670 96.154 1.50e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme137330g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme137330g00001 - - mnt:21399057 291.197