Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme137178g00001 TGTGCCTTAAGGTTTTCAAACGTAGCCGTCAACAACGACTCTTCTTCGAGTTCGAGTGCCAATTCTTCGCCTCAATTGATCAACAAAGGAATCAAGAAGAAAGCTCTCAAGACATTTCCCACAGTGAGCTACTCAACTGAGTTGAAACTGCCAAGTTTGGACACGGAGTGTATGATATGTCTCTCAGAATTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCACGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGCACACTCATCATGCCCCAAGTGCAGGCAGTGTCTCCTTGAGACTTGTCGAAAGATTGTTGAGTCGGAAGCACCACCTATGTTGTCAGTGCCAGAAACTATTATTAGGATTCAGCCACTAGTCGCTGAAGCTTTTGTACGTAACTATAGGGAAGCAAGCTGA 432 0.4444 CALRFSNVAVNNDSSSSSSANSSPQLINKGIKKKALKTFPTVSYSTELKLPSLDTECMICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVESEAPPMLSVPETIIRIQPLVAEAFVRNYREAS 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme137178g00001 143 CDD RING-H2_EL5-like 56 99 - -
Trme137178g00001 143 PANTHER RING-H2 FINGER PROTEIN ATL78 1 133 IPR044602 GO:0016567|GO:0016740
Trme137178g00001 143 SMART ring_2 57 98 IPR001841 -
Trme137178g00001 143 FunFam RING-H2 finger protein ATL73 15 104 - -
Trme137178g00001 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 103 IPR013083 -
Trme137178g00001 143 Pfam Ring finger domain 56 99 IPR001841 -
Trme137178g00001 143 SUPERFAMILY RING/U-box 35 104 - -
Trme137178g00001 143 ProSiteProfiles Zinc finger RING-type profile. 57 99 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme137178g00001 Trme-Chr137178 75 506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme137178g00001 1 103 C3H Transcription Factor Family AT3G10910 49.057 2.07e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme137178g00001 K19040 - gmx:100780127 205.682