Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme137028g00001 ATAGATGCTGCAAGTATTCAGCCAGTAGTAGAAGATACTGGAAGCAAGCAAGAAGGTTCAGAGGAGAACAAAGCTAAGGATGAAAAAACCAATACAGTACCTTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCATTTATTGATGTTTGTTGGGACTATTGGTGCTCTTGGGAATGGAATCTCCCCGCCCTTGATGATTTTAATATTTGGAAATATGATCAATGCATTTGGAGGATCATCAAGCACCAAAGAAGTTGTTGATGAAGTTTCCAAGGTAATCAATCAATCATCCTGA 300 0.38 IDAASIQPVVEDTGSKQEGSEENKAKDEKTNTVPLYKLFSFADPLDHLLMFVGTIGALGNGISPPLMILIFGNMINAFGGSSSTKEVVDEVSKVINQSS 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme137028g00001 99 PANTHER ABC TRANSPORTER B FAMILY 16 85 IPR039421 -
Trme137028g00001 99 MobiDBLite consensus disorder prediction 1 29 - -
Trme137028g00001 99 MobiDBLite consensus disorder prediction 15 29 - -
Trme137028g00001 99 Gene3D ABC transporter type 1, transmembrane domain 28 99 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme137028g00001 Trme-Chr137028 1 300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme137028g00001 26 93 Calmodulin-binding Proteins AT2G36910 39.130 3.03e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme137028g00001 K05658 - lja:Lj4g3v2227840.1 135.576