Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme136872g00001 ATTTTCTCGATTAAGGTTATTCGCAATAAGCAGACTGGTCAAACGGAGGGTTATGGATTTGTGGAATTCCATTCGCATGGGACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATGTTGATGCCTAACACAGAGCAATATTTCCGCCTTAACTGGGCGACATTTAGCACAGGAGATCACAAACGCTCAGATAATGTCCCTGATCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCTTGAAACTTTTTCTAATAGATATCCTTCTGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACCGGTCGTTCAAAGGGTTATGGTTTC 345 0.4 IFSIKVIRNKQTGQTEGYGFVEFHSHGTAEKVLQNYAGMLMPNTEQYFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDSMLLETFSNRYPSVKAAKVVFDANTGRSKGYGF 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme136872g00001 115 SUPERFAMILY RNA-binding domain, RBD 1 115 IPR035979 GO:0003676
Trme136872g00001 115 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 55 IPR000504 GO:0003723
Trme136872g00001 115 Gene3D - 68 115 IPR012677 -
Trme136872g00001 115 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 115 IPR000504 GO:0003723
Trme136872g00001 115 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 45 IPR000504 GO:0003723
Trme136872g00001 115 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 115 IPR000504 GO:0003723
Trme136872g00001 115 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 3 115 - -
Trme136872g00001 115 Gene3D - 1 54 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme136872g00001 Trme-Chr136872 235 579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme136872g00001 1 115 Eukaryotic Initiation Factors Gene Family AT1G71770 31.897 1.24e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme136872g00001 - - gmx:100777830 209.534