Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13667g00001 ATGACGTATGAAAAACTCTTTTTTCAGTGTCCACCGATTTTAGAAGAGCGCGACGCTTTAACCTCTACGGATGTTACGACCGATTCACTCACTGCTGGATTGCTGGTAGGCTTGAACGTGGAAGAATCCACACCTGATACTTACCAGTCTCCTCCTGCACCTCTGCCTTATGATGTGGTCTTGGGAGGTACAGCGTCGACAGATTCTGAGTCAGGAAGAGACACTGTTGTTAGTGGTAGTAGTTTTGAAACTTTAATTACAGAAGATATTGAAGAATCTGACCCTAAAGCTCAAGCTAAATCTGCACCAATATCTCCAAGCAAGGAAGAACTGTGGAAATCAAGTGAACCTCATTCATTGGTGATAGAAGAAGAGGACGGCTGTCCAATTTGCCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTTACAAAATGTGAACACCACTTTCACCTAGCTTGYATTCTTGAGTGGATGGAAAGAAGTGACTCTTGTCCTATATGTGATCAG 510 0.4235 MTYEKLFFQCPPILEERDALTSTDVTTDSLTAGLLVGLNVEESTPDTYQSPPAPLPYDVVLGGTASTDSESGRDTVVSGSSFETLITEDIEESDPKAQAKSAPISPSKEELWKSSEPHSLVIEEEDGCPICLEEYDVENPKTLTKCEHHFHLACILEWMERSDSCPICDQ 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13667g00001 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 170 IPR013083 -
Trme13667g00001 170 ProSiteProfiles Zinc finger RING-type profile. 128 169 IPR001841 -
Trme13667g00001 170 Pfam Ring finger domain 128 168 IPR001841 -
Trme13667g00001 170 FunFam Putative E3 ubiquitin-protein ligase RHB1A 104 170 - -
Trme13667g00001 170 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 26 170 - -
Trme13667g00001 170 SMART ring_2 128 168 IPR001841 -
Trme13667g00001 170 MobiDBLite consensus disorder prediction 89 117 - -
Trme13667g00001 170 SUPERFAMILY RING/U-box 119 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13667g00001 Trme-Chr13667 717 1489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13667g00001 6 170 C3H Transcription Factor Family AT4G00335 52.976 2.44e-50 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13667g00001 - - tpra:123885727 313.153