Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13665g00001 ATGTTTGTGCTGTATGTTTTTTCAGAAGTGGTTCCTGGTGGTATTATGCTGGGAAGAGAGTTTTCTAATGCCTATATTGACCAAGCGCAACAGCAAGCAGAACGCTGTAGGTTGTGCCGCGGAAATGCTTTTCCAGGCATCACGTTTACAATGCACATACCCGAGGACTTGTGCGTGAAGTGTCTGTTGTTAATAGCTAAGCAGACTAGTGCTTTTTACAGTGAGAATAACTACCTTGCAGGTAGAGTTGCAGATCTCGAACAGGTTCTTCAGGTAAAGTATAAGTCCCGAATGTGTCATCATTGGGAAAATGGAAACTGTCTACGTGGCGACGCTTGTCGCTTTGCACACGGCGAAGCAGAACTAGCCGGGAATGGCTAG 381 0.4593 MFVLYVFSEVVPGGIMLGREFSNAYIDQAQQQAERCRLCRGNAFPGITFTMHIPEDLCVKCLLLIAKQTSAFYSENNYLAGRVADLEQVLQVKYKSRMCHHWENGNCLRGDACRFAHGEAELAGNG 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13665g00001 126 SUPERFAMILY CCCH zinc finger 91 122 IPR036855 GO:0046872
Trme13665g00001 126 SMART c3hfinal6 93 119 IPR000571 GO:0046872
Trme13665g00001 126 FunFam Zinc finger CCCH domain-containing protein 88 124 - -
Trme13665g00001 126 Gene3D - 87 124 - -
Trme13665g00001 126 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 119 IPR000571 GO:0046872
Trme13665g00001 126 ProSiteProfiles Zinc finger C3H1-type profile. 93 120 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme13665g00001 zf-CCCH 5.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13665g00001 - K18753 tpra:123897127 50.0618