Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13644g00001 AATAAAATCAATATTGTGGAGGCCGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCACAAAATCCAAATCTGCAGGCGTCTGCAACTGCAGCGTTGCTCACACTATCAGCCTCTTCAACCAACAAACCAATTATTAGTGCTTGTGGCGCCATTCCCCTTCTTGTGGAGATTCTTAAAGACGGAAGCCCACAGGCAAAAGCCGATGCAGTTATGGCTCTTGCTAATTTATCAACATATCCTGATATTCTTAGCATTATTCTCAAAACAAATCCAATCCCTTTCATAGTTGATATCCTCAAAACTTGCAAAAAGTCCTCAAAAACAGCTGAAAAATGTTGTGCTTTGATAGAACCCTTGGTGGATTACGACGAATGCAGAACTTCCTTGATATCTGAGGAAGGTGGGATTCTCGCAGTTGTGGAGGTTCTCGAAAATGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGAGCACTACTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCAATTCTTAAAGAAGGTGTGATTCCAGGCCTACTCGAGCTCACTGTTCATGGAACACCAAAGTCTCAGACAAAAGCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATTCAACCCGACACGCTTGAGAATATAGTATGCAACATCATATCTCAGATTGATGGGGAAGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGT 749 0.4246 NKINIVEAGALEPILSFLKSQNPNLQASATAALLTLSASSTNKPIISACGAIPLLVEILKDGSPQAKADAVMALANLSTYPDILSIILKTNPIPFIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTSLISEEGGILAVVEVLENGTLQSREHAVGALLTMCQSDRCKYREPILKEGVIPGLLELTVHGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGEDQSGKAKKMLAEMVQV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13644g00001 250 Gene3D - 120 238 IPR011989 -
Trme13644g00001 250 Pfam Armadillo/beta-catenin-like repeat 1 37 IPR000225 GO:0005515
Trme13644g00001 250 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 9 51 IPR000225 GO:0005515
Trme13644g00001 250 SMART arm_5 123 164 IPR000225 GO:0005515
Trme13644g00001 250 SMART arm_5 1 38 IPR000225 GO:0005515
Trme13644g00001 250 SMART arm_5 39 79 IPR000225 GO:0005515
Trme13644g00001 250 FunFam U-box domain-containing protein 4 1 250 - -
Trme13644g00001 250 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 50 78 IPR000225 GO:0005515
Trme13644g00001 250 PANTHER U BOX DOMAIN-CONTAINING 1 209 - -
Trme13644g00001 250 Gene3D - 1 119 IPR011989 -
Trme13644g00001 250 SUPERFAMILY ARM repeat 11 222 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13644g00001 1 210 U-box Gene Family AT2G23140 32.381 8.30e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13644g00001 - - gmx:100809684 430.639