Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme136356g00001 TTCAGTGGAAAGTCTATAGGCTCTATTTCTACTACTCAGCTTTTCATAAATCCAGATTTCCCCGAGGCTCGGAGCTTAAGAAACTGGTTTGATCATGTCGGAAAAGATTCTGCTTCTCTATCTGTTTCTAAGGACATTACTCACAAAAATGAGATACGCAAAACTGTGTCTCAAATCAAAGGTGAAGGTTTGGGGAGGTCAGACAAACCAGACTGGATAACATTGAGGGCAGCCATATCATTCATTAATGCTGATACATTTTGTTACACGTGTTGCCCTCTGATGATTGGAGATCGGAAGTGCAATAAGAAAGTGATAAGGTCGGTAGACACAAAATGGAAGTGTAATAGGTGCAACAAGGAGTTTGAGGAATGCGACTATCGATACATTCTCCAAGCTCAAATACTGGATGATACTGGAATAACTTGGGTTACTGCTTTCCAGGAAGCAGGGGAAGAGATTATGGGGTACTCCGCAAAATATCTGGATGCAGTGAAGTATGAACATGAGAATGTTCAGAAGTTTGGAAATATAATCAAGAGTAGACTCTTCAACCAATTTGTATTTAGGCTGAAAATCA 580 0.4 FSGKSIGSISTTQLFINPDFPEARSLRNWFDHVGKDSASLSVSKDITHKNEIRKTVSQIKGEGLGRSDKPDWITLRAAISFINADTFCYTCCPLMIGDRKCNKKVIRSVDTKWKCNRCNKEFEECDYRYILQAQILDDTGITWVTAFQEAGEEIMGYSAKYLDAVKYEHENVQKFGNIIKSRLFNQFVFRLKI 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme136356g00001 193 PANTHER REPLICATION FACTOR A 1, RFA1 3 192 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trme136356g00001 193 CDD RPA1_DBD_C 56 193 IPR047192 -
Trme136356g00001 193 Gene3D - 1 39 IPR012340 -
Trme136356g00001 193 Gene3D - 40 193 IPR012340 -
Trme136356g00001 193 FunFam Replication protein A subunit 38 193 - -
Trme136356g00001 193 SUPERFAMILY Nucleic acid-binding proteins 53 192 IPR012340 -
Trme136356g00001 193 Pfam Replication factor-A C terminal domain 72 192 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme136356g00001 Trme-Chr136356 2 581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme136356g00001 1 193 Core DNA Replication Machinery Family AT2G06510 65.482 6.70e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme136356g00001 K07466 - gmx:100792409 311.997