Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1361g00001 GATACTGTCACAAACATCAAGAATGTCTATGGAGTGGCTAGAAATTGGCAAGGAGATCCATGTGGTCCTGCGAAGTATATGTGGGAAGGCCTAAATTGCAGTTTTAAAGGCTTAAATCCCCCAAGAATCATATCTTTGAATTTGTCTTCAAGTGGACTGACAGGGCAGATACATTATTCCATATCACAGCTCAATATGTTACAATATTTGGATTTATCAAACAATAGCTTAAACGGTCCCTTACCTGTTTTTCTGAACAAACTGGAGTCATTAAAAGTCTTAAACGTGGGTAAGAATAAACTTACGGGGTTAGTTCCAAGTGAACTCCTTGAGAGATCAAAAACAGGTTCACTATCACTGAGTGTCAATGATAATCCTGGTCTTCGTATTACGGAATCCAGCAGAAAAAAGAATTGGTCTGTACCTGTGATTGCTTCATTTTCAGCATTAAATGTTGTAATTCTCTTGATTTCTCTTGGATTTTGGATATTTAGAAGGAAGAGAGTTTTATGTTCAAATTCCAAGGAAAAGGGTGGAATGAAATTAAAACATCAAACATTCAGTTACATTGAAATTCTCAATATTACTCATAACTTTAGAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTATCTTGGTGTTNNNNNNAATCACACCCAAGTTGCGGTTAAGATACTTTCACCATCTTCCATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTATTGATTGTTCATCATAGAAATTTGGTCTCTCTCATTGGATTTTGTGACGAAGGTGAAATCAAAGCATTGATCTATGAATACATGGCCAATGGAAATCTCCAACAACACTTATTAGTGAAAAATGCAAATATCTTAAAATGGAATGAGAGACTTAACATTGCAATTGATGCAGCACACGGATTGGATTATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAACCTTCCAACATATTATTAGATGAAAACATGCATGCCAAGATTGCGGATTTTGGTCTAAGTAGAGCCTTTGGTGATGATATTGATTCTCATATATCCACCCGCCCTGCTGGTACATTTGGTTACGCTGATCCTGAGTAA 1107 0.3595 DTVTNIKNVYGVARNWQGDPCGPAKYMWEGLNCSFKGLNPPRIISLNLSSSGLTGQIHYSISQLNMLQYLDLSNNSLNGPLPVFLNKLESLKVLNVGKNKLTGLVPSELLERSKTGSLSLSVNDNPGLRITESSRKKNWSVPVIASFSALNVVILLISLGFWIFRRKRVLCSNSKEKGGMKLKHQTFSYIEILNITHNFRTIIGEGGFGKVYLGVXXNHTQVAVKILSPSSMQGYKEFQSEAQLLLIVHHRNLVSLIGFCDEGEIKALIYEYMANGNLQQHLLVKNANILKWNERLNIAIDAAHGLDYLHNGCKPPIMHRDLKPSNILLDENMHAKIADFGLSRAFGDDIDSHISTRPAGTFGYADPE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1361g00001 368 SUPERFAMILY Protein kinase-like (PK-like) 182 368 IPR011009 -
Trme1361g00001 368 FunFam Leucine-rich repeat receptor-like protein kinase 173 272 - -
Trme1361g00001 368 ProSitePatterns Protein kinases ATP-binding region signature. 203 225 IPR017441 GO:0005524
Trme1361g00001 368 Gene3D Phosphorylase Kinase; domain 1 179 272 - -
Trme1361g00001 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Trme1361g00001 368 Pfam Leucine Rich Repeat 67 82 IPR001611 GO:0005515
Trme1361g00001 368 Gene3D Ribonuclease Inhibitor 2 155 IPR032675 -
Trme1361g00001 368 FunFam Os07g0541700 protein 273 361 - -
Trme1361g00001 368 FunFam Leucine-rich repeat receptor-like kinase 1 131 - -
Trme1361g00001 368 ProSiteProfiles Protein kinase domain profile. 197 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1361g00001 368 SUPERFAMILY L domain-like 5 158 - -
Trme1361g00001 368 PRINTS Leucine-rich repeat signature 67 80 - -
Trme1361g00001 368 PRINTS Leucine-rich repeat signature 88 101 - -
Trme1361g00001 368 Pfam Protein tyrosine and serine/threonine kinase 199 349 IPR001245 GO:0004672|GO:0006468
Trme1361g00001 368 Gene3D Transferase(Phosphotransferase) domain 1 273 368 - -
Trme1361g00001 368 SMART serkin_6 197 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1361g00001 368 PANTHER OS07G0107800 PROTEIN-RELATED 2 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1361g00001 Trme-Chr1361 55 2717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1361g00001 15 368 Receptor kinase-like Gene Family AT2G19230 54.596 2.00e-128 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme1361g00001 PK_Tyr_Ser-Thr 3.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1361g00001 - - mtr:25500366 537.339