Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13600g00001 GCAGGTATGATTGAATTTGTTGGGTTGATTAAGGTTAATGTGTCGGTGAAGACGCGTGTCATAAAGAACAATTTAAATCCAGTTTGGAATGAATGTCTAATGCTATCAATTCCTGAGAGCATGCCTCCTCTTAAAGTGATTGTATATGACAAAGATTCATTCAAAAATGATGATTTTATGGGAGAGGCTGAAATAGATATTCAACCACTTGTTTCAGCAGCAAAAGCATATGAGAAATCTTCAATCAATGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGATAACACACTTGTGAAAGATGGAATAATCTCACTTGAAGAAGGAAAAGTGAGACAAGAAATCTCATTGAGGCTACAACATGTTGAGAGAGGTGTGCTTGAAATTGAGCTTGAATGTGTTCCTCTTACTCAATAG 420 0.369 AGMIEFVGLIKVNVSVKTRVIKNNLNPVWNECLMLSIPESMPPLKVIVYDKDSFKNDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGDNTLVKDGIISLEEGKVRQEISLRLQHVERGVLEIELECVPLTQ 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13600g00001 139 ProSiteProfiles C2 domain profile. 1 81 IPR000008 -
Trme13600g00001 139 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 126 IPR035892 -
Trme13600g00001 139 Gene3D C2 domain 6 138 IPR035892 -
Trme13600g00001 139 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 15 139 IPR044518 GO:0005096|GO:0005543
Trme13600g00001 139 Pfam C2 domain 13 75 IPR000008 -
Trme13600g00001 139 SMART C2_3c 4 79 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13600g00001 Trme-Chr13600 485 1157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13600g00001 2 139 C2H2 Transcription Factor Family AT4G05330 45.399 1.82e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13600g00001 K12486 - gmx:100799376 236.884