Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme135893g00001 CTTCCAAAGTGTTACATGAGGCAGCTTTTGACGGGACTTCACTATTGTCATGTCAATCAAGTTCTTCACCGTGATATCAAAGGTTCAAATCTTCTCATAGATAATGAAGGTAATCTGAAGCTGGCAGATTTTGGATTGGCTCGGTCATTTTCGAATGAGCACAATGCAAACCTTACAAATCGAGTCATCACATTATGGTACAGGTAA 207 0.3961 LPKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYR 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme135893g00001 68 PANTHER CELL DIVISION PROTEIN KINASE 3 68 - -
Trme135893g00001 68 Pfam Protein kinase domain 3 68 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme135893g00001 68 SUPERFAMILY Protein kinase-like (PK-like) 3 68 IPR011009 -
Trme135893g00001 68 Gene3D Transferase(Phosphotransferase) domain 1 3 68 - -
Trme135893g00001 68 ProSitePatterns Serine/Threonine protein kinases active-site signature. 21 33 IPR008271 GO:0004672|GO:0006468
Trme135893g00001 68 ProSiteProfiles Protein kinase domain profile. 1 68 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme135893g00001 Trme-Chr135893 1 311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme135893g00001 3 68 Core Cell Cycle Gene Families AT5G10270 90.909 1.99e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme135893g00001 Pkinase 1.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme135893g00001 K08819 - gmx:100793565 141.739