Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13580g00001 GAACTACCTGAACCTCAAAGAGCAGATGCTGTTAGCAGCATGGTTTATGAAGCTAATGCTAGGATAAGGGACCCAGTTTATGGTTGTGCAGGTGCAATATGTCAACTTCAAAAACAAGTTAGTGAACTACAAACACAGCTAGCCAAAGCACAAGCTGAGATAGTGAACATGCATTGCCAACAAGCAAATTTAGTGGCACTAATTTGCATGGAAATGAGTAATCAATCATCACCACAAGACCATAACATGATAATTAATCAGCCACAACCTCATGTTGATATGAGTTGCTTCTTAGAAGACAACAATTTTGGGTCTGCTTGGGAGCCTCTTTGGACATGA 339 0.4041 ELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLAKAQAEIVNMHCQQANLVALICMEMSNQSSPQDHNMIINQPQPHVDMSCFLEDNNFGSAWEPLWT 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13580g00001 112 Pfam Lateral organ boundaries (LOB) domain 2 51 IPR004883 -
Trme13580g00001 112 Coils Coil 33 60 - -
Trme13580g00001 112 ProSiteProfiles LOB domain profile. 1 54 IPR004883 -
Trme13580g00001 112 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13580g00001 Trme-Chr13580 630 968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13580g00001 1 112 AS2 family AT1G07900 58.621 2.44e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme13580g00001 LOB 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13580g00001 - - gmx:100806667 189.504