Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme135806g00001 ACTATACGCAATCACACGGAGAGAAGGAATCTGAATTTTTTCTCATGTGGGACTGGAAATCCAATGGATGACTGCTGGCGCTGTGACAAGCGTTGGGCCTTCAGGCGAAAGAGGTTAGCTGATTGTGCTATTGGTTTTGGTCGCAATGCAATTGGTGGGCGCGATGGAAGGTACTATGTTGTGACAGACCCTAAAGATGACGACCCTGTGAATCCAAGACCGGGGACTCTCCGTCATGCTGTCATTCAAGACAGGCCATTGTGGATTGTGTTCAAGAGAGACATGGTGATCACCCTGAAGCAAGAACTCATCATGAACAGCTTCAAGACTATTGATGGTCGTGGCGCAAATGTTCATATTGCCTTTGGAGCCTGCATTACTATCCAGTTTATAACCAATGTCATCATCCATGGTGTTCATATCCATGATTGTAAGCCGACAGGGAATGCTATGGTTCG 458 0.4672 TIRNHTERRNLNFFSCGTGNPMDDCWRCDKRWAFRRKRLADCAIGFGRNAIGGRDGRYYVVTDPKDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVR 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme135806g00001 153 PRINTS Pollen allergen Amb family signature 42 59 IPR018082 -
Trme135806g00001 153 PRINTS Pollen allergen Amb family signature 66 91 IPR018082 -
Trme135806g00001 153 PRINTS Pollen allergen Amb family signature 102 118 IPR018082 -
Trme135806g00001 153 SUPERFAMILY Pectin lyase-like 4 152 IPR011050 -
Trme135806g00001 153 Gene3D - 19 153 IPR012334 -
Trme135806g00001 153 PANTHER PECTATE LYASE 18-RELATED 6 153 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme135806g00001 Trme-Chr135806 125 582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme135806g00001 1 153 Polysaccharide Lyase AT3G07010 83.007 3.66e-97 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme135806g00001 K01728 - csv:101207204 301.982