Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1355741g00001 GGTGGAAATCAGTTTGTGACAACTTCGCTTTACGTTGGAGATCTGGATCCGAATGTAACTGATTCTCAGCTGTATGACTTGTTCAACCAATTGGGTCAAGTTGTGTCTGTTAGGGTTTGCAGGGATTTGACCACTAGGAGGTCACTTGGTTATGGTTATGTCAACTTTAGCAACCCGCAAGATGGTTAG 189 0.4392 GGNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDG 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1355741g00001 62 PANTHER RIBONUCLEOPROTEIN RB97D 7 61 - -
Trme1355741g00001 62 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 61 IPR000504 GO:0003723
Trme1355741g00001 62 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 62 IPR000504 GO:0003723
Trme1355741g00001 62 SUPERFAMILY RNA-binding domain, RBD 7 61 IPR035979 GO:0003676
Trme1355741g00001 62 Gene3D - 3 62 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1355741g00001 Trme-Chr1355741 1 189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1355741g00001 2 62 Eukaryotic Initiation Factors Gene Family AT4G34110 77.049 3.61e-27 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1355741g00001 K13126 - pvu:PHAVU_003G0475000 125.561