Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13555g00001 ATGAAACCGCACCAAGTCGAAGGATTCAACTTTCTTGTCAGAAACTTGGCGGGGGACCATCCTGGGGGATGCATCCTGGCTCACGCTCCAGGATCTGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGTTTTCTAGGAAAGTATCCTAATGCCAGACCTCTAGTGGTGCTTCCCAAGGGAATATTGTCAACTTGGAAAAAAGAGTTTCAGACATGGCAAGTGGAAGATATTCCGCTTTATGACCTATACACTGTGAAGGCAGACAGTAGACCTCAACAACTAGAGGTGTTAAAACAATGGATGGATAACAAGAGTATCCTTTTTTTAGGATACAAACAGTTTTCTTCCATTGTGATTGATAATAGTAATAACAATGCATCGATAGCTTGCCGAGATATATTGCTTAAGGTTCCCTCAATTCTCATTTTAGATGAGGGACACACTCCAAGAAATGAGAATACTGATATGGTACAGTCCCTTGCCAAAGTACTAACACCAAGGAAAGTTGTACTGTCTGGAACCCTTTATCAAAATCATGTCAGGGAGGTATTCAACGTTCTCAATCTGGTGCGGCCGAAGTTTTTAAAGATGGAAACATCTAAGCCTATTGTCCGGCGCATTCAGAGTAGGATCCATATAAGTGGCGTGAAGCGCTTCGATGAATTGGTCGAGAATACATTGCAGAAGGATCCAGATTTTAAAAGGAAAGTGGCTGTAATTCATGATTTGCGTGAGATGACCAGCAAAGTTCTTCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTAGATTTCACTGTGGTGCTCAAACTTACACCTAGACAGAAGCATGAAGTTGAGAAAGTAAGGAAGATATTAAGAAAGTTCAAAATGTCTGCTGTAGGCAGTGCAGTGTATTTGCACCCTAAGTTGAAGCCACTTGCAGATAAATGCGTTGAAAAATCGGTTCTTCAAAAACAAAAATGCGTTGAAAAATCCATATCGGATAATATAATGGATGATTTTATAGCAAACCTAGATGTTAGAGATGGGGTCAAATCAAAATTCTTTCGCAATATGCTGAATCTATGTGAATCAGCTGGGGAGAAACTTTTGGTGTTCAGTCAATATCTCTTGCCTTTGAAATATTTGGAAAGGTTAGCTGTGAAGTGGAAGGGATGGGGTGTCGGAAAAGAAATCTTTGTGATTTCAGGAGATTCAACTGCCGAACAAAGGGAGTTTTCCATGGACAAGTTTAACAATACACCCGAGGCAAAAATATTTTTTGGGTCAATCAAAGCATGTGGTGAGGGTATATCGTTGGTTGGGGCATCCCGTGTCATCATCTTGGATGTTCACCTAAACCCATCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGGCCAGGCCAGAAAAGAAAAGTCTTTGTGTATCGATTGGTAGCTGGTGATTCTCCAGAAGAGGAAGATCACAATACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTG 1502 0.4061 MKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRPQQLEVLKQWMDNKSILFLGYKQFSSIVIDNSNNNASIACRDILLKVPSILILDEGHTPRNENTDMVQSLAKVLTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLKMETSKPIVRRIQSRIHISGVKRFDELVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQKHEVEKVRKILRKFKMSAVGSAVYLHPKLKPLADKCVEKSVLQKQKCVEKSISDNIMDDFIANLDVRDGVKSKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERLAVKWKGWGVGKEIFVISGDSTAEQREFSMDKFNNTPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLVAGDSPEEEDHNTCFKKELISKM 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13555g00001 500 Pfam Helicase conserved C-terminal domain 358 466 IPR001650 -
Trme13555g00001 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 213 IPR027417 -
Trme13555g00001 500 Gene3D - 1 230 IPR038718 -
Trme13555g00001 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 353 500 IPR001650 -
Trme13555g00001 500 Pfam SNF2-related domain 21 230 IPR000330 GO:0005524|GO:0140658
Trme13555g00001 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 496 IPR027417 -
Trme13555g00001 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 15 194 IPR014001 -
Trme13555g00001 500 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 500 IPR044567 GO:0080188
Trme13555g00001 500 Gene3D - 264 500 IPR027417 -
Trme13555g00001 500 SMART ultradead3 1 207 IPR014001 -
Trme13555g00001 500 CDD SF2_C_SNF 350 478 - -
Trme13555g00001 500 SMART helicmild6 382 467 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13555g00001 Trme-Chr13555 18 1519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13555g00001 364 485 RAD5 or RAD16-like Gene Family AT5G43530 39.344 2.23e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme13555g00001 SNF2_N 2.2e-19 CL0023