Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13554g00001 ATGATTTGGGGCAGACATCCTATTCACGGAGATCAAGGTATTCTGCCTCTCCCTCTCCATCGCCCTCTCCATACAGGCGATACAGTAGGTCTTTGTCCAGGTCTCTATCAAGGTCCATATCCAGAAGCCGTTCGAGGTAGGATTCCCCATCGGAGCACATCCCGTGATGCAGAAAATCCGGGAAACAATCTGTATGTGACAGGACTGTCTCCCAGGATTACCAAGAGAGAACTAGAAAAGCATTTTGCTGCTGAGGGAAAAGTTGTAGATGTGCATCTGGTTGTTGATCCATGGACAAGGGAATCACGGGGTTTTGGATTTGTGACGATGGCGTCTTTAGAAGAAGCTGATCGATGTGTTAAGTATCTGAATCGCTCTGTACTTGAAGGGCGTGTTATCATGGTAGAGAAG 411 0.4745 MIWGRHPIHGDQGILPLPLHRPLHTGDTVGLCPGLYQGPYPEAVRGRIPHRSTSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVVDVHLVVDPWTRESRGFGFVTMASLEEADRCVKYLNRSVLEGRVIMVEK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13554g00001 137 SUPERFAMILY RNA-binding domain, RBD 47 136 IPR035979 GO:0003676
Trme13554g00001 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 137 IPR000504 GO:0003723
Trme13554g00001 137 Gene3D - 45 137 IPR012677 -
Trme13554g00001 137 CDD RRM_SF 64 136 - -
Trme13554g00001 137 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 58 137 - -
Trme13554g00001 137 SMART rrm1_1 63 136 IPR000504 GO:0003723
Trme13554g00001 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13554g00001 Trme-Chr13554 120 868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13554g00001 22 136 Eukaryotic Initiation Factors Gene Family AT3G11400 30.508 1.12e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13554g00001 - - vvo:131662224 170.244