Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme135499g00001 ATGGCTGATGGTGATGCTGTTTCGATCTTCGGTTCAAGTCATATTTGGGTTGATCATAATTCTTTATCTCATTGTGCTGATGGTCTTGTTGATGCTGTCATGGGATCAACCGCTATAACCATTTCTAACAACCATTTCACTCACCACAATGAGGTGATTCTGTTGGGACACAGTGACTCCTACACAAGAGACAAGCAAATGCAAGTGACAATAGCTTATAACCATTTT 228 0.4035 MADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHF 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme135499g00001 76 Gene3D - 1 76 IPR012334 -
Trme135499g00001 76 PANTHER PECTATE LYASE 18-RELATED 2 76 IPR045032 GO:0030570
Trme135499g00001 76 SUPERFAMILY Pectin lyase-like 3 76 IPR011050 -
Trme135499g00001 76 Pfam Pectate lyase 2 76 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme135499g00001 Trme-Chr135499 1 430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme135499g00001 1 76 Polysaccharide Lyase AT4G13710 93.421 9.80e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme135499g00001 K01728 - gmx:100808253 159.844