Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme135456g00001 ATGAGGATTTTGCATTTTGACATTAAGCCTCATAATATTCTTCTTGATGTGAATTTCAGTCCAAAGGTTTCGGATTTTGGACTAGCAAAGTTATATCCAATTGATAATAGCATTGTGTCGCTTACTGCTGCAAGAGGAACGATGGGATACATGGCGCCGGAATTGTTCTATAAGAACATTGGAGGAGTATCTTACAAAGCTGATGTTTATAGTTTTGGAATGTTGTTAATGGAAATGGCAAGTAGGAGAAGGAACATGAATGAGGGTGAAGATCATAAGAGTCAAGTTTATTTCCCTTCTTGGGTTTATGACCAATTTAGCGAAGGGAAGGAGATAGAAATGGGGAATGGTACGGAGGAGGAAGAGAAGATATTGAAGAAGATGATAATAGTTGCATTGTGGTGTATACAGATGAAACCAAGTGATCGTCCTTCGATGAACAAAGTGGTTGAGTTGCTTGAAGGAGATGTTGAGTCATTGGAAATGCCTCCTAAGCCATTTCAAACTCCAAAAGGAATGCCTGTACAAGGCATTGGACAA 540 0.3907 MRILHFDIKPHNILLDVNFSPKVSDFGLAKLYPIDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRRNMNEGEDHKSQVYFPSWVYDQFSEGKEIEMGNGTEEEEKILKKMIIVALWCIQMKPSDRPSMNKVVELLEGDVESLEMPPKPFQTPKGMPVQGIGQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme135456g00001 180 Gene3D Transferase(Phosphotransferase) domain 1 1 168 - -
Trme135456g00001 180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 3 15 IPR008271 GO:0004672|GO:0006468
Trme135456g00001 180 MobiDBLite consensus disorder prediction 161 180 - -
Trme135456g00001 180 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 167 IPR045874 GO:0004672
Trme135456g00001 180 SUPERFAMILY Protein kinase-like (PK-like) 2 153 IPR011009 -
Trme135456g00001 180 Pfam Protein kinase domain 2 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme135456g00001 180 SMART serkin_6 1 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme135456g00001 180 ProSiteProfiles Protein kinase domain profile. 1 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme135456g00001 Trme-Chr135456 1 540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme135456g00001 2 167 Receptor kinase-like Gene Family AT5G38280 54.118 3.57e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme135456g00001 Pkinase 1.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme135456g00001 - - cam:101507916 352.443