Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13526g00001 TTCCTTCTCTGTGCAGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATTTACGAGGGTTATGCTCTACCACATGCCATCCTTCGTCTTGATCTGGCTGGTCGCGATCTCACTGATTTCCTGATGAAGATTTTGACTGAACGTGGTTACTCTTTTACCACCTCAGCAGAGCGTGAAATTGTTCGTGATGTGAAAGAAAAGTTGTCATACATTGCTCTTGACTATGAGCAAGAGCTGGAGACAGCCAGGACCAGCTCTTCCGTCGAGAAGAGCTACGAATTGCCTGATGGACAGGTGATCACTATTGGAGACGAGCGTTTCAGGTGTCCAGAGGTCCTGTTCCAACCATCCATGATAGGAATGGAAGCAGCAGGAATTCACGAGACCACATACAACTCCATCATGAAGTGCGACGTCGATATNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNACTATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATCTCTGCTTTGGCCCCAAGTAGCATGAAGATCAAGGTGGTCGCACCACCTGAGAGAAAATACAGTGTCTGGATTGGTGGTTCCATCTTGGCATCTCTTAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAATATGATGAATCTGGTCCATCTATTGTGCACAGAAAGTGCTTCTAG 696 0.4425 FLLCAGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDVKEKLSYIALDYEQELETARTSSSVEKSYELPDGQVITIGDERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDXXXXXXXXXXXXXXXTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13526g00001 231 FunFam Actin, muscle 36 127 - -
Trme13526g00001 231 Gene3D - 3 190 - -
Trme13526g00001 231 FunFam Actin, alpha skeletal muscle 180 231 - -
Trme13526g00001 231 ProSitePatterns Actins signature 2. 212 220 IPR004001 -
Trme13526g00001 231 Gene3D Actin; Chain A, domain 4 37 120 - -
Trme13526g00001 231 PANTHER ACTIN 4 224 IPR004000 -
Trme13526g00001 231 Pfam Actin 6 231 IPR004000 -
Trme13526g00001 231 SMART actin_3 1 231 IPR004000 -
Trme13526g00001 231 SUPERFAMILY Actin-like ATPase domain 6 231 IPR043129 -
Trme13526g00001 231 Gene3D - 191 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13526g00001 Trme-Chr13526 3 1332 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13526g00001 6 231 Cytoskeleton Gene Families AT3G12110 89.823 7.09e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13526g00001 K10355 - gmx:100781831 412.149