Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme135225g00001 ATTCAGGACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGATGGGCGAACTTTGGCCGATTACAACATTCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTGAAGACATTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGCTCAGACACCATTGACAATGTAAAAGCYAAGATYCAGGACAAGGAGGGCATTCCTCCGGACCAGCAAAGGTTGATTTTTGCTGGAAARCAGCTTGAAGATGGACGAACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGCGGGGAGGTATGCAGATCTTTGTGAAGACTTTGACAGGGAAGACCATTACTTTGGAGGTTGAAAGTTCTGATACAATTGATAATGTCAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTAGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTGTTG 582 0.4588 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme135225g00001 194 FunFam Polyubiquitin 5 1 47 - -
Trme135225g00001 194 PANTHER UBIQUITIN 1 49 - -
Trme135225g00001 194 CDD Ubl_ubiquitin 124 194 - -
Trme135225g00001 194 ProSiteProfiles Ubiquitin domain profile. 1 47 IPR000626 GO:0005515
Trme135225g00001 194 ProSitePatterns Ubiquitin domain signature. 150 175 IPR019954 -
Trme135225g00001 194 SUPERFAMILY Ubiquitin-like 47 123 IPR029071 -
Trme135225g00001 194 FunFam Polyubiquitin 3 48 123 - -
Trme135225g00001 194 Pfam Ubiquitin family 1 45 IPR000626 GO:0005515
Trme135225g00001 194 Pfam Ubiquitin family 50 121 IPR000626 GO:0005515
Trme135225g00001 194 Pfam Ubiquitin family 126 194 IPR000626 GO:0005515
Trme135225g00001 194 Gene3D - 1 47 - -
Trme135225g00001 194 Gene3D - 48 123 - -
Trme135225g00001 194 Gene3D - 124 194 - -
Trme135225g00001 194 CDD Ubl_ubiquitin 48 123 - -
Trme135225g00001 194 SUPERFAMILY Ubiquitin-like 123 194 IPR029071 -
Trme135225g00001 194 ProSiteProfiles Ubiquitin domain profile. 48 123 IPR000626 GO:0005515
Trme135225g00001 194 SUPERFAMILY Ubiquitin-like 1 47 IPR029071 -
Trme135225g00001 194 PRINTS Ubiquitin signature 79 99 IPR019956 -
Trme135225g00001 194 PRINTS Ubiquitin signature 100 121 IPR019956 -
Trme135225g00001 194 PRINTS Ubiquitin signature 58 78 IPR019956 -
Trme135225g00001 194 ProSiteProfiles Ubiquitin domain profile. 124 194 IPR000626 GO:0005515
Trme135225g00001 194 FunFam Polyubiquitin 3 124 194 - -
Trme135225g00001 194 SMART ubq_7 1 43 IPR000626 GO:0005515
Trme135225g00001 194 SMART ubq_7 124 194 IPR000626 GO:0005515
Trme135225g00001 194 SMART ubq_7 48 119 IPR000626 GO:0005515
Trme135225g00001 194 ProSitePatterns Ubiquitin domain signature. 74 99 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme135225g00001 Trme-Chr135225 2 583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme135225g00001 1 48 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.917 2.38e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme135225g00001 K08770 - qsu:112017119 379.022