Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme135120g00001 ATGAATCTATGCTGTTCTGACCATGCTGCAAGTGCAAAGGAACCTATTAAGAAATCTAAGAAAAAAGAACTATCTATGAAAGCAGAATCTTCTCCGATTCGTCGCGATGAAAACAAAATTATTTTTTTTGAAGATTGTAATCTTGCATTTGATCTAGAGGATCTGTTAAGTGCTTCTAGTAAGATTCTTGGAAAGGGTTCTATTGGAACAACATATAAAGCTGCATTAGAGGATGTTACCACTGTGGTTGTAAAGAGGTTGAAAGATGTTACTGTTGGAAAAAGAGAGTTTGAACAACATATGGAAGTTGTAGGAAAAATTAAGCATGAAAATGTGGATGCATTAAGAGCATACTATTATTCAAAAGATGAGAAATTAGTAGTATATGATTATTATCATCAAGGCAGTGTTTATTCCATCTTACATG 427 0.3302 MNLCCSDHAASAKEPIKKSKKKELSMKAESSPIRRDENKIIFFEDCNLAFDLEDLLSASSKILGKGSIGTTYKAALEDVTTVVVKRLKDVTVGKREFEQHMEVVGKIKHENVDALRAYYYSKDEKLVVYDYYHQGSVYSILH 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme135120g00001 142 Gene3D Phosphorylase Kinase; domain 1 16 131 - -
Trme135120g00001 142 ProSiteProfiles Protein kinase domain profile. 57 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme135120g00001 142 SUPERFAMILY Protein kinase-like (PK-like) 61 142 IPR011009 -
Trme135120g00001 142 PANTHER OS05G0588300 PROTEIN 30 142 - -
Trme135120g00001 142 FunFam pollen receptor-like kinase 1 25 131 - -
Trme135120g00001 142 Pfam Protein tyrosine and serine/threonine kinase 60 142 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme135120g00001 Trme-Chr135120 11 437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme135120g00001 17 142 Receptor kinase-like Gene Family AT4G23740 61.905 2.70e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme135120g00001 PK_Tyr_Ser-Thr 1.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme135120g00001 - - tpra:123908572 248.054