Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme135084g00001 ATGCGATCTGGTAAGTTTGGAGCCCGCAAAGGTAAAGTCTGTTACTTTCTATTCTACCTCGCTTTACTTCCTTCTATGCTGTACGTGAACTGTGTTTCTAAAACCTTTGAGGTCGCCGATGCCGCCTATTTAAATCCAACTAAATTGTCAACTGAACAGATCGTGGAGATCCTTAAAGACCGCCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNCCATGATCCCTACTAGTAATGGAGGTACTATTGAGCTTGTGTACATGCAGACTTATGCCCCAACTACACTGGCTCCTGCACGGGGTTTTGGACTCTTCGATACACAACTATGTTGGAGAATGGTAGTATTGTGGTATGCAAATAATTGA 372 0.3898 MRSGKFGARKGKVCYFLFYLALLPSMLYVNCVSKTFEVADAAYLNPTKLSTEQIVEILKDRXXXXXXXXXXXXXXMIPTSNGGTIELVYMQTYAPTTLAPARGFGLFDTQLCWRMVVLWYANN 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme135084g00001 123 Coils Coil 55 61 - -
Trme135084g00001 123 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 33 104 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme135084g00001 Trme-Chr135084 66 437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme135084g00001 49 104 Homeobox Transcription Factor Family AT5G60690 58.929 2.45e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme135084g00001 K09338 - pda:103703962 62.7734