Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1348g00001 ATGGACAAAGCATTTGATACTCTTGGTTCTGTTAGTACCGGTAAAGAGTCATGGCGAATCAAGGTTCGGGTTCTTCGTTTATGGAGTGTGTACTCTTTCATGAAACCTGATCAGGTTAACTCACTTGAAATGGTGTTGATTGATGAAAAGGGGGTGAAGATCCATGCTTCTGTTCGTCGTCAGTTGCTTTATTTGTTTCGTTCGAAAATCGTTGAAGGGAATGTTTACAAGATGTCATATTTCATTGTATGTCCAGAATCTGGAATTTACCGCACAACTCCACATCCATTTAAACTTATTTTTGAGATGAAAACAAAAGTTCAGAGCTGTGAAAATGATACCATAGATCGATTTGGATTGTCACTCACGACTATTGCAGAGATTTGTGCTTATGGACCTGATCATGATTTCTTAGTTGATGTTGTTGGGTTGATTAGTGGTATTTCTGCTCAGAGGGAGTATATTCGTGATGGTAAAGTTACCAGGATGATTGTGCTTGAGTTGACTGATAATAGTGCAAAGTGTGAGTGTGCTTTGTTTGGTGATTATGCTGATGATCTCCAAAAGATGATTGGCAAGATTAATCATGTATTGCCAGTTGTTGTGCTTCAATTTGCCAAAATTAAGATTTTCAGAGGGAAGGTATCCATTCAAAATGTTTTGAATGCCACAAGGATTTATGTCAATCCTTCAATACCAGAGGTTGTTTCTTTCAAAGAAAGTCTTGCTGTTGATGGGGTTGAGTTTGCTGCTTCCATCCCTACTATTGGGCCTAATGCTAGGCCTTCTTTAGAAGAAGATTTTTTGGTTAATTATCCCAAAACTTGCATTGCAAAATTACTTGGTATGGAAGAGGATGGTATTTATGTTGTTGGTGGTGTTGTTGATGGGCTGGTTGATGCTGAAGATTGGTGGTATCCAGCATGTACTTGTCATAGAAGTGTTTCTGCTGACTCTGGTGCATATTACTGCAAACAATGTGTGAAACATGTTTTCAAGATGGTTCCAAGGTTTAGGGTCAAATTGAGGGTTGATGATGGATCTGGCCAGGCTGTGTTTGTTGTGTTTGATGGTGATATGAGTGTTTTGTGTGGAAAACCTTGCCATGAATTGGTTGCTTTGTCCAAGGGACAAAATGCTGGTTATTACCCTCCTGAACTAGACTTGCTTAAAGGGATGAGATTGTTGCTTAAGGTAGAGAAAAGGTCTTCTGGTTCTATTCTGTTTGATGGTTCATTCAGAGTGAAGAGGATATGCTGTGATTTGTCTATTATGGATGTCTTTGATTCATTGTTGGGTAAGGATGATTCTGGTGCTGAAGATGAAGTGAATGTTGAAGAAGAGTATGTTGATAATACTCAGGTTGATGATTTTGTTGGTAATCTTATTGTGTCACCTTCCTCTGCCAAACCTGTAGAAGAATATTCTGTTCTTACTGGGAATGTACTGCCTGAAGTTGTCAATTTGGGTGATGATTCTGATAGTGGTTTGGAATTTTTCGTTCCTGGGCGTGTTGGATTGCAGGGCAAGAAAATTGATTCTGTTAAGCGAAATCTGCTTTCTGCTTTTTCAGAATGTGATGAT 1584 0.3889 MDKAFDTLGSVSTGKESWRIKVRVLRLWSVYSFMKPDQVNSLEMVLIDEKGVKIHASVRRQLLYLFRSKIVEGNVYKMSYFIVCPESGIYRTTPHPFKLIFEMKTKVQSCENDTIDRFGLSLTTIAEICAYGPDHDFLVDVVGLISGISAQREYIRDGKVTRMIVLELTDNSAKCECALFGDYADDLQKMIGKINHVLPVVVLQFAKIKIFRGKVSIQNVLNATRIYVNPSIPEVVSFKESLAVDGVEFAASIPTIGPNARPSLEEDFLVNYPKTCIAKLLGMEEDGIYVVGGVVDGLVDAEDWWYPACTCHRSVSADSGAYYCKQCVKHVFKMVPRFRVKLRVDDGSGQAVFVVFDGDMSVLCGKPCHELVALSKGQNAGYYPPELDLLKGMRLLLKVEKRSSGSILFDGSFRVKRICCDLSIMDVFDSLLGKDDSGAEDEVNVEEEYVDNTQVDDFVGNLIVSPSSAKPVEEYSVLTGNVLPEVVNLGDDSDSGLEFFVPGRVGLQGKKIDSVKRNLLSAFSECDD 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1348g00001 528 SUPERFAMILY Nucleic acid-binding proteins 281 399 IPR012340 -
Trme1348g00001 528 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Trme1348g00001 528 CDD RPA1_DBD_A_like 19 107 - -
Trme1348g00001 528 Gene3D - 115 250 IPR012340 -
Trme1348g00001 528 Gene3D - 274 418 IPR012340 -
Trme1348g00001 528 Gene3D - 5 110 IPR012340 -
Trme1348g00001 528 Pfam Domain of unknown function DUF223 43 111 IPR003871 -
Trme1348g00001 528 Pfam Replication factor-A C terminal domain 299 379 IPR013955 -
Trme1348g00001 528 SUPERFAMILY Nucleic acid-binding proteins 120 246 IPR012340 -
Trme1348g00001 528 CDD RPA1_DBD_B_like 140 242 - -
Trme1348g00001 528 PANTHER OS03G0429900 PROTEIN 8 405 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1348g00001 Trme-Chr1348 184 2611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1348g00001 1 365 Core DNA Replication Machinery Family AT5G08020 22.775 5.97e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1348g00001 - - tpra:123893724 686.411