Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13488g00001 ATGTATTATCGTGGAGTTATGGCTGGCCAAATTGGTCATGGTATCATGGAAGAAGAATTATGGAGGAAAGGACCTTGGACTGCTGAAGAGGATAGGTTGCTAATTGAATATGTTAGGGTGCATGGTGAAGGGAGATGGAATTCTGTTGCTAGACTTGCTGCACTGAAATATGTGATTACATTCAATTGTTTCATTTTCTCAAATTTTTCTCTATGTCGCATATGCCAGTGTTGCGTCATGTGTTTTGTATATGGTGGCCTCAATGATCACATCAATAGTGAATCTCTTAAATTTATCTACTATAGCAGGATTGAGAAGGAATGGAAAGAGTTGCAGATTGAGATGGGTGAATTATCTAAGGCCAGATCT 369 0.3875 MYYRGVMAGQIGHGIMEEELWRKGPWTAEEDRLLIEYVRVHGEGRWNSVARLAALKYVITFNCFIFSNFSLCRICQCCVMCFVYGGLNDHINSESLKFIYYSRIEKEWKELQIEMGELSKARS 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13488g00001 123 SMART sant 22 63 IPR001005 -
Trme13488g00001 123 Pfam Myb-like DNA-binding domain 23 52 IPR001005 -
Trme13488g00001 123 CDD SANT 25 56 IPR001005 -
Trme13488g00001 123 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 52 IPR017930 -
Trme13488g00001 123 ProSiteProfiles Myb-like domain profile. 22 51 IPR001005 -
Trme13488g00001 123 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 56 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trme13488g00001 123 SUPERFAMILY Homeodomain-like 21 53 IPR009057 -
Trme13488g00001 123 Gene3D - 22 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13488g00001 Trme-Chr13488 1 805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13488g00001 16 56 MYB Transcription Factor Family AT4G13480 87.805 4.50e-20 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme13488g00001 Myb_DNA-binding 6.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13488g00001 K09422 - gmx:100795981 102.449