Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme1347662g00001 | ATGCACAAAAAGGTTTGGATTGCTGCAGGTGATATCATCCTGGTCGGACTCCGTGATTATCAAGATGATAAGGCTGATGTTATCCTTAAATTCATGCCTGATGAAGCTCGTCTTTTGAAAGCTTATGGTGAGCTTCCTGAGG | 142 | 0.4296 | MHKKVWIAAGDIILVGLRDYQDDKADVILKFMPDEARLLKAYGELPE | 47 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme1347662g00001 | 47 | Pfam | Translation initiation factor 1A / IF-1 | 1 | 29 | IPR006196 | GO:0003723|GO:0003743|GO:0006413 | |
| Trme1347662g00001 | 47 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 47 | IPR012340 | - | |
| Trme1347662g00001 | 47 | Gene3D | - | 1 | 47 | IPR012340 | - | |
| Trme1347662g00001 | 47 | ProSiteProfiles | S1 domain IF1 type profile. | 1 | 32 | IPR006196 | GO:0003723|GO:0003743|GO:0006413 | |
| Trme1347662g00001 | 47 | SMART | eIF1neu4 | 1 | 46 | IPR001253 | GO:0003743|GO:0006413 | |
| Trme1347662g00001 | 47 | PANTHER | EIF-1A | 1 | 47 | IPR001253 | GO:0003743|GO:0006413 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme1347662g00001 | 1 | 47 | Eukaryotic Initiation Factors Gene Family | AT5G35680 | 95.745 | 1.23e-27 | 94.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme1347662g00001 | K03236 | - | dcr:108210195 | 97.4413 |