Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13464g00001 ATGCCACAAGCCCCTGGCATCCGCCCTCGAGTGCGAGCAAGAAGAGGCCAAGCCACTGACCCCCACAGCATTGCTGAGAGGTTGCGTCGTGAAAGAATCGCGGAAAGAATGAAGGCATTACAGGAGTTAGTTCCAAGCATCAACAAGACGGACAAAGCAGCAATGCTTGATGAAATTGTTGATTATGTGAAGTTTCTTAGGCTCCAAGTTAAGGTCTTGAGTATGAGTAGACTTGGTGGAGCTGGAGCAGTTGCTCAACTTGTAGCTGATGTTCCTGTTTCTGCTGTGGAGGGGGACGACATAGAAGGTGGAGCTAACCAACAAGCCTGGGCGAAGTGGTCGAACGATGGAACAGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTTGGTGCAGCTATGCAACTTCTACAATCAAAGGCACTTTGTATCATGCCTATATCTCTAGCCTCAGCAATTTTTCGTATGCCTCAATCAGACACATCAACAATCATCAAGCCTGAATCAAACAACAGCCACACATAG 525 0.4705 MPQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGDDIEGGANQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDTSTIIKPESNNSHT 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13464g00001 174 MobiDBLite consensus disorder prediction 1 21 - -
Trme13464g00001 174 Gene3D - 12 74 IPR036638 GO:0046983
Trme13464g00001 174 Pfam Helix-loop-helix DNA-binding domain 22 66 IPR011598 GO:0046983
Trme13464g00001 174 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 151 - -
Trme13464g00001 174 SMART finulus 23 72 IPR011598 GO:0046983
Trme13464g00001 174 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 66 IPR011598 GO:0046983
Trme13464g00001 174 FunFam Transcription factor bHLH66 14 79 - -
Trme13464g00001 174 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 76 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13464g00001 Trme-Chr13464 8 1512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13464g00001 3 170 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 77.647 1.07e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme13464g00001 HLH 7.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13464g00001 - - gmx:100807570 292.352