Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1345843g00001 ATGAACATCAAGGATGGGTCTAAGGAGGATACGATGGCTTTAAGTGTTGTATCGTCAGGAGTGTACGGTGATGAATCAAAGGATAATGATGTTTTATATTATAGTGGTCAAGGTGAGAATTTCAACAAGAAAGATAAACATGTGACTGATCAGAAGCTTCAAAGGG 166 0.3795 MNIKDGSKEDTMALSVVSSGVYGDESKDNDVLYYSGQGENFNKKDKHVTDQKLQR 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1345843g00001 55 MobiDBLite consensus disorder prediction 40 55 - -
Trme1345843g00001 55 Pfam SAD/SRA domain 7 55 IPR003105 -
Trme1345843g00001 55 SUPERFAMILY PUA domain-like 9 55 IPR015947 -
Trme1345843g00001 55 Gene3D - 2 55 IPR036987 -
Trme1345843g00001 55 ProSiteProfiles YDG domain profile. 1 55 IPR003105 -
Trme1345843g00001 55 MobiDBLite consensus disorder prediction 35 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1345843g00001 Trme-Chr1345843 9 174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1345843g00001 4 55 Su(var)3-9 homologs AT1G73100 50.000 3.47e-10 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1345843g00001 K24405 - gmx:100817062 87.8113