Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13456g00001 GCTGATCTCATCCTACTTTCATCAAGCTATGAAGATGCAATTTGCTATGTTGAGACAATGAATCTCGATGGAGAAACAAATCTTAAACTCAAACAAGCACTTGAAGAAACTTCCAAATTTCAAGAAGACTCCACCTTTCGAAATTTCAAAGCAATCATTAAATGTGAAGATCCAAATGCATATCTATACTCTTTCATAGGAAACATTGAGCTTGAAGATCAACTATATCCGCTTTCGCCTCAGCAGTTACTGCTTAGGGACTCAAAGCTTAGGAACACTGATTTTATATACGGCGTAGTTATCTTTACCGGCCATGATACAAAAGTTATGCAGAATTCGACTGACCCTCCATCTAAGAGAAGCAAAGTCGAGAAGCGAATGGATAAGATAATCTACTTTCTCTTCTCAGTTTTGTTTTTTATTTCTTTTATTGGTTCAATTTTCTTCGGCATTGCAACAAGTGAGGATCTTGAAAATGGAGTAATGAAGAGATGGTACCTCAGGCCAGATGATACTACGATCTACTACAATCCGAAGAAAGCACCGATTGCGGCAATGCTCCATTTCTTGACTGCACTAATGTTGTATAGTTACTTGATTCCAATTTCTTTGTATGTCTCCATTGAAATTGTGAAAGTCCTTCAAAGCATCTTCGTCAACCACGATGTACACATGTATTACGAGGAAACTGACCAGCCTGCACGCGCTCGTACCTCAAATTTGAACGAAGAACTTGGTCAAGTTGATACTATTCTTTCGGATAAAACAGGAACTTTGACTTGTAATTCTATGGAATTCGTCAAGTGTTCAATTGCTGGGATCGCCTACGGACGAGGTGCTACAGAAGTTGAGAGAGCTCTAGCGAGGAGAAAAGACTTAGATGGCAATGTTGCGGAGATTTCTGAAGCAAAGTCATCCATTAAAGGTTTTAACTTCATGGATGAAAGGATTATGAATGGAAATTGGGTCAAGGAACCTCACGCCAATGTAATCCAGAACTTCATGCGTTTGTTGGCAGTATGCCATACTGCAATACCTGAAGTTGATGAAGAAACCGGCAACGTTTCTTATGAAGCCGAGTCACCGGATGAGGCAGCTTTTGTAATTGCAGCTAAACAACTTGGATTTGAGTTTTATGAAAGGACCCAGACAACTATTTCCCTGCGCGAGTTCAATTCCATAACAGGCAGGACTATTAGAAGGTCCTACAAACTTTTGAATATATTAGAGTTTAGTAGTGCAAGAAAAAGAATGTCTGTTATTGTACGAGATGAGGAGGGGAAACTGCTACTTATTAGCAAAGGGGCTGACAGGTTTGTAAATTTGCTTATTACTTATAGTTCATGGCACGACAAAACTTAG 1362 0.3935 ADLILLSSSYEDAICYVETMNLDGETNLKLKQALEETSKFQEDSTFRNFKAIIKCEDPNAYLYSFIGNIELEDQLYPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVMQNSTDPPSKRSKVEKRMDKIIYFLFSVLFFISFIGSIFFGIATSEDLENGVMKRWYLRPDDTTIYYNPKKAPIAAMLHFLTALMLYSYLIPISLYVSIEIVKVLQSIFVNHDVHMYYEETDQPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIAGIAYGRGATEVERALARRKDLDGNVAEISEAKSSIKGFNFMDERIMNGNWVKEPHANVIQNFMRLLAVCHTAIPEVDEETGNVSYEAESPDEAAFVIAAKQLGFEFYERTQTTISLREFNSITGRTIRRSYKLLNILEFSSARKRMSVIVRDEEGKLLLISKGADRFVNLLITYSSWHDKT 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13456g00001 453 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 317 437 IPR023299 GO:0000166
Trme13456g00001 453 ProSitePatterns E1-E2 ATPases phosphorylation site. 254 260 IPR018303 -
Trme13456g00001 453 SUPERFAMILY Calcium ATPase, transmembrane domain M 114 246 IPR023298 -
Trme13456g00001 453 NCBIfam phospholipid-translocating P-type ATPase 1 440 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trme13456g00001 453 Gene3D - 1 114 - -
Trme13456g00001 453 Gene3D - 283 452 IPR023299 GO:0000166
Trme13456g00001 453 Pfam Cation transport ATPase (P-type) 341 438 - -
Trme13456g00001 453 SUPERFAMILY HAD-like 240 281 IPR036412 -
Trme13456g00001 453 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 440 - -
Trme13456g00001 453 SUPERFAMILY Calcium ATPase, transduction domain A 1 112 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13456g00001 Trme-Chr13456 3 1483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13456g00001 1 437 Primary Pumps ATPases AT1G68710 70.889 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13456g00001 K01530 - gmx:100797039 720.694