Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme134534g00001 ATGGCGACTAACCGATTCGTCTGCGAAATATGCAACAAAGGGTTCCAAAGGGATCAAAATCTTCAACTTCATAGAAGAGGTCACAACTTACCATGGAAGCTAAAGCAAAGATCCAACAAAGAACCAAGAAAAAAGGTATACATCTGTCCGGAGAAAACCTGCGTCCACCACGACGCAGCCAGGGCGCTCGGAGACCTTACTGGAATAAAGAAACATTTTAGCAGAAAACATGGAGAAAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACCCTCTTCTCTAG 356 0.4213 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFS 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme134534g00001 118 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Trme134534g00001 118 FunFam Zinc finger protein MAGPIE 2 29 - -
Trme134534g00001 118 Gene3D Classic Zinc Finger 2 29 - -
Trme134534g00001 118 Gene3D Classic Zinc Finger 39 118 - -
Trme134534g00001 118 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 118 IPR031140 -
Trme134534g00001 118 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Trme134534g00001 118 SMART c2h2final6 6 28 IPR013087 -
Trme134534g00001 118 SMART c2h2final6 82 102 IPR013087 -
Trme134534g00001 118 SMART c2h2final6 47 77 IPR013087 -
Trme134534g00001 118 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Trme134534g00001 118 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme134534g00001 Trme-Chr134534 13 368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme134534g00001 1 118 IDZ Gene Family AT5G66730 88.136 9.84e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme134534g00001 zf-C2H2_jaz 2.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme134534g00001 K25870 - tpra:123892932 259.61